Basic Information:

  VIRBase ID:  

VHID00497189

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-5-5p:  MIMAT0015218          ARAP1:  NM_001135190     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	kshv-miR-K12-5-5p	ARAP1
miRBase Accession/Entrez ID	MIMAT0015218	116985
Organism	Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	CENTD2

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	ARAP1	chr11:72445166(-) A-I      intronic chr11:72446565(-) A-I      intronic chr11:72446602(-) A-I      intronic chr11:72446095(-) A-I      intronic chr11:72460739(-) A-I      intronic chr11:72460747(-) A-I      intronic chr11:72445439(-) A-I      intronic chr11:72446497(-) A-I      intronic chr11:72446190(-) A-I      intronic chr11:72445304(-) A-I      intronic chr11:72460827(-) A-I      intronic chr11:72445442(-) A-I      intronic chr11:72426737(-) A-I      intronic chr11:72443843(-) A-I      intronic chr11:72445195(-) A-I      intronic chr11:72430378(-) A-I      intronic chr11:72426807(-) A-I      intronic chr11:72446202(-) A-I      intronic chr11:72460672(-) A-I      intronic chr11:72426213(-) A-I      intronic chr11:72426804(-) A-I      intronic chr11:72427106(-) A-I      intronic chr11:72426730(-) A-I      intronic chr11:72444022(-) A-I      intronic chr11:72426688(-) A-I      intronic chr11:72460858(-) A-I      intronic chr11:72426797(-) A-I      intronic chr11:72456881(-) A-I      intronic chr11:72448789(-) A-I      intronic chr11:72426692(-) A-I      intronic chr11:72448825(-) A-I      intronic chr11:72427155(-) A-I      intronic chr11:72445201(-) A-I      intronic chr11:72448829(-) A-I      intronic chr11:72443778(-) A-I      intronic chr11:72446603(-) A-I      intronic chr11:72426762(-) A-I      intronic chr11:72446627(-) A-I      intronic chr11:72446558(-) A-I      intronic chr11:72427028(-) A-I      intronic chr11:72446164(-) A-I      intronic chr11:72456726(-) A-I      intronic chr11:72426799(-) A-I      intronic chr11:72426835(-) A-I      intronic chr11:72426718(-) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	ARAP1	chr11:72396182-72396183(-) m6A 3'UTR//exon       25456834 chr11:72396224-72396225(-) m6A 3'UTR//exon       25456834 chr11:72396317-72396318(-) m6A 3'UTR//exon       25456834//27773535//27773536 chr11:72396325-72396326(-) m6A 3'UTR//exon       25456834//27773535//27773536 chr11:72396395-72396396(-) m6A 3'UTR//exon       27773535//27773536 chr11:72396405-72396406(-) m6A 3'UTR//exon       27773535//27773536 chr11:72396480-72396481(-) m6A 3'UTR//exon       27773536 chr11:72396509-72396510(-) m6A 3'UTR//exon       27773536 chr11:72398332-72398333(-) m6A exon//intron       27371828 chr11:72398418-72398419(-) m6A exon//intron       27371828 chr11:72398608-72398609(-) m6A exon//intron       27371828 chr11:72398628-72398629(-) m6A exon//intron       27371828 chr11:72398749-72398750(-) m6A CDS//exon       27371828 chr11:72398757-72398758(-) m6A CDS//exon       27371828 chr11:72399516-72399517(-) m6A CDS//exon       27371828 chr11:72399740-72399741(-) m6A exon//intron       - chr11:72399789-72399790(-) m6A exon//intron       - chr11:72399824-72399825(-) m6A exon//intron       - chr11:72404466-72404467(-) m6A CDS//exon       27773536 chr11:72404792-72404793(-) m6A CDS//exon       27773536 chr11:72406057-72406058(-) m6A CDS//exon       27773535//27773536 chr11:72406065-72406066(-) m6A CDS//exon       27773535 chr11:72406591-72406592(-) m6A CDS//exon       - chr11:72407795-72407796(-) m6A exon//intron       27773535//27371828//27773536 chr11:72407974-72407975(-) m6A exon//intron       27773536 chr11:72408192-72408193(-) m6A CDS//exon       27371828//27773536 chr11:72408201-72408202(-) m6A CDS//exon       27371828//27773536 chr11:72408384-72408385(-) m6A CDS//exon       27371828//27773536//22575960 chr11:72408420-72408421(-) m6A CDS//exon       27371828//27773536//22575960 chr11:72408447-72408448(-) m6A CDS//exon       24284625//27371828//27773536//22575960 chr11:72408498-72408499(-) m6A CDS//exon       24284625//24981863//27773535//27371828//27773536//22575960 chr11:72408672-72408673(-) m6A CDS//exon       24284625//24981863//27773535//27371828//27773536 chr11:72408681-72408682(-) m6A CDS//exon       24284625//24981863//27773535//27371828//27773536 chr11:72408968-72408969(-) m6A CDS//exon       27773535//27371828 chr11:72412812-72412813(-) m6A CDS//exon       27371828//27773536 chr11:72413955-72413956(-) m6A CDS//exon       27371828//27773536 chr11:72413963-72413964(-) m6A CDS//exon       27371828//27773536 chr11:72414035-72414036(-) m6A 5'UTR//CDS//exon       27371828//27773536 chr11:72414084-72414085(-) m6A 5'UTR//CDS//exon       27371828//27773536 chr11:72414095-72414096(-) m6A 5'UTR//CDS//exon       27371828//27773536 chr11:72421457-72421458(-) m6A CDS//exon//intron       27773535//22575960 chr11:72422513-72422514(-) m6A CDS//exon       27773535 chr11:72423252-72423253(-) m6A CDS//exon       27773536 chr11:72423258-72423259(-) m6A CDS//exon       27773536 chr11:72423544-72423545(-) m6A CDS//exon       25456834//24981863//27371828//27773536 chr11:72423693-72423694(-) m6A 5'UTR//exon//intron       27371828 chr11:72423731-72423732(-) m6A 5'UTR//exon//intron       27371828 chr11:72423736-72423737(-) m6A 5'UTR//exon//intron       - chr11:72424138-72424139(-) m6A 5'UTR//exon//intron       27371828 chr11:72424146-72424147(-) m6A 5'UTR//exon//intron       27371828 chr11:72424155-72424156(-) m6A 5'UTR//exon//intron       27371828 chr11:72424202-72424203(-) m6A exon//intron       24981863//27371828 chr11:72432912-72432913(-) m6A 5'UTR//exon//intron       24284625//24209618 chr11:72433048-72433049(-) m6A 5'UTR//exon//intron       27773535 chr11:72433072-72433073(-) m6A 5'UTR//exon//intron       27773535 chr11:72433111-72433112(-) m6A 5'UTR//exon//intron       27773535 chr11:72433121-72433122(-) m6A 5'UTR//exon//intron       27773535 chr11:72433156-72433157(-) m6A 5'UTR//intron       24981863//27773535 chr11:72433180-72433181(-) m6A 5'UTR//intron       24981863//27773535 chr11:72433270-72433271(-) m6A 5'UTR//intron       24981863//27773535 chr11:72433294-72433295(-) m6A 5'UTR//intron       24981863//27773535 chr11:72433311-72433312(-) m6A 5'UTR//intron       24981863//27773535 chr11:72433336-72433337(-) m6A 5'UTR//intron       24981863//27773535 chr11:72437684-72437685(-) m6A CDS       - chr11:72437760-72437761(-) m6A CDS       - chr11:72438030-72438031(-) m6A CDS       24284625//25456834//27371828 chr11:72438175-72438176(-) m6A 5'UTR       27371828 chr11:72438210-72438211(-) m6A 5'UTR       27371828 chr11:72443585-72443586(-) m6A 5'UTR       27371828 chr11:72465804-72465805(-) m6A intron       24209618//25456834//24981863//27371828//27773536 chr11:72465910-72465911(-) m6A intron       24284625//24209618//25456834//24981863//28052920//27371828//27773536//22608085 chr11:72465915-72465916(-) m6A intron       24284625//24209618//25456834//24981863//28052920//27371828//27773536//22608085 chr11:72466032-72466033(-) m6A intron       24284625//24209618//25456834//24981863//27371828//27773536//22608085 chr11:72466044-72466045(-) m6A intron       24284625//24209618//25456834//24981863//27371828//27773536//22608085 chr11:72466139-72466140(-) m6A intron       24209618//24981863//27773536//22608085 chr11:72468909-72468910(-) m6A intron       27773535 chr11:72469580-72469581(-) m6A intron       27773535 chr11:72469593-72469594(-) m6A intron       27773535 chr11:72469653-72469654(-) m6A intron       27773535 chr11:72470329-72470330(-) m6A intron       27773535 chr11:72470346-72470347(-) m6A intron       27773535//27371828 chr11:72470392-72470393(-) m6A intron       27773535//27371828 chr11:72491206-72491207(-) m6A intron       27773535//27371828//27773536 chr11:72491232-72491233(-) m6A intron       27773535//27371828//27773536 chr11:72491259-72491260(-) m6A intron       27773535//27371828 chr11:72492095-72492096(-) m6A intron       24284625//25456834//24981863//27773535//27371828//27773536//22608085 chr11:72492140-72492141(-) m6A intron       24284625//25456834//24981863//27773535//27371828//27773536//22608085 chr11:72492255-72492256(-) m6A intron       24284625//24209618//25456834//27371828//27773536 chr11:72492261-72492262(-) m6A intron       24284625//24209618//25456834//27371828//27773536 chr11:72492276-72492277(-) m6A intron       24284625//24209618//25456834//27371828//27773536 chr11:72492819-72492820(-) m6A intron       24209618//24981863//27773536 chr11:72504026-72504027(-) m6A 5'UTR       25456834 chr11:72504405-72504406(-) m6A 5'UTR       24981863//22608085 chr11:72504432-72504433(-) m6A 5'UTR       25456834//24981863//22608085 chr11:72504495-72504496(-) m6A 5'UTR       25456834//24981863//22608085 chr11:72504520-72504521(-) m6A 5'UTR       25456834//24981863//22608085 chr11:72504572-72504573(-) m6A 5'UTR       24981863//22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	ARAP1	Chromatin K562 cells     - Exosome Blood     - Membrane HCC cell line (HepG2)     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)|K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: kshv-miR-K12-5-5p
Interactor2: ARAP1

Evidence Support:

Prediction-Evidence	miRanda//RNAHybrid//Targetscan
Support Database	VmiReg