Basic Information:

  VIRBase ID:  

VHID00497167

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-5-5p:  MIMAT0015218          PIK3IP1:  NM_052880     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	kshv-miR-K12-5-5p	PIK3IP1
miRBase Accession/Entrez ID	MIMAT0015218	113791
Organism	Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	HGFL//hHGFL(S)//TrIP

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	PIK3IP1	chr22:31681258(-) A-I      intronic chr22:31681261(-) A-I      intronic chr22:31681262(-) A-I      intronic chr22:31681282(-) A-I      intronic chr22:31683129(-) A-I      intronic chr22:31683179(-) A-I      intronic chr22:31683119(-) A-I      intronic chr22:31683173(-) A-I      intronic chr22:31683184(-) A-I      intronic chr22:31683185(-) A-I      intronic chr22:31683201(-) A-I      intronic chr22:31683218(-) A-I      intronic chr22:31684160(-) A-I      intronic chr22:31684171(-) A-I      intronic chr22:31683477(-) A-I      intronic chr22:31683512(-) A-I      intronic chr22:31683583(-) A-I      intronic chr22:31683589(-) A-I      intronic chr22:31684142(-) A-I      intronic chr22:31683092(-) A-I      intronic chr22:31683125(-) A-I      intronic chr22:31683164(-) A-I      intronic chr22:31683168(-) A-I      intronic chr22:31683172(-) A-I      intronic chr22:31683174(-) A-I      intronic chr22:31683177(-) A-I      intronic chr22:31683187(-) A-I      intronic chr22:31683231(-) A-I      intronic chr22:31683075(-) A-I      intronic chr22:31681896(-) A-I      intronic chr22:31683181(-) A-I      intronic chr22:31683588(-) A-I      intronic chr22:31683182(-) A-I      intronic chr22:31683454(-) A-I      intronic chr22:31679625(-) A-I      intronic chr22:31680084(-) A-I      intronic chr22:31682037(-) A-I      intronic chr22:31684296(-) A-I      intronic chr22:31679982(-) A-I      intronic chr22:31684281(-) A-I      intronic chr22:31684145(-) A-I      intronic chr22:31679918(-) A-I      intronic chr22:31681914(-) A-I      intronic chr22:31684241(-) A-I      intronic chr22:31683428(-) A-I      intronic chr22:31683284(-) A-I      intronic chr22:31682031(-) A-I      intronic chr22:31680083(-) A-I      intronic chr22:31684197(-) A-I      intronic chr22:31683595(-) A-I      intronic chr22:31684199(-) A-I      intronic chr22:31684268(-) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	PIK3IP1	chr22:31682207(-) A-I intron -    21960545

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	PIK3IP1	chr22:31678973-31678974(-) m6A 3'UTR//exon       24209618//25456834//24981863//27773535//27371828//22608085 chr22:31678998-31678999(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//22608085 chr22:31679026-31679027(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//22608085 chr22:31679039-31679040(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//22608085 chr22:31679083-31679084(-) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//22608085 chr22:31679134-31679135(-) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//22608085 chr22:31679158-31679159(-) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//22608085 chr22:31679255-31679256(-) m6A 3'UTR//CDS//exon       24209618//27773535//27371828 chr22:31685050-31685051(-) m6A 3'UTR//intron       24209618//27773535 chr22:31687245-31687246(-) m6A CDS       27371828 chr22:31687269-31687270(-) m6A CDS       27371828 chr22:31688370-31688371(-) m6A 5'UTR       24981863//27371828 chr22:31688409-31688410(-) m6A 5'UTR       24981863//27371828 chr22:31688446-31688447(-) m6A 5'UTR       24981863//27371828

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	PIK3IP1	Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleoplasm K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: kshv-miR-K12-5-5p
Interactor2: PIK3IP1

Evidence Support:

Prediction-Evidence	miRanda//RNAHybrid//Targetscan
Support Database	VmiReg