Detail Information

Basic Information:


  VIRBase ID:  

VHID00497156

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-5-5p:           LRRC4B:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol kshv-miR-K12-5-5p LRRC4B
miRBase
Accession/Entrez ID		 MIMAT0015218 94030
Organism Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV) Homo sapiens
Category miRNA mRNA
Alias - HSM//LRIG4//NGL-3

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR LRRC4B
chr19:51061655(-) A-I      intronic
chr19:51061653(-) A-I      intronic
chr19:51061640(-) A-I      intronic
chr19:51043826(-) A-I      intronic
chr19:51043817(-) A-I      intronic
chr19:51042256(-) A-I      intronic
chr19:51042251(-) A-I      intronic
chr19:51043816(-) A-I      intronic
chr19:51042250(-) A-I      intronic
chr19:51042237(-) A-I      intronic
chr19:51043796(-) A-I      intronic
chr19:51062605(-) A-I      intronic
chr19:51062608(-) A-I      intronic
chr19:51043782(-) A-I      intronic
chr19:51066026(-) A-I      intronic
chr19:51066087(-) A-I      intronic
chr19:51043808(-) A-I      intronic
chr19:51066044(-) A-I      intronic
chr19:51043806(-) A-I      intronic
chr19:51061612(-) A-I      intronic
chr19:51039628(-) A-I      intronic
chr19:51038656(-) A-I      intronic
chr19:51034251(-) A-I      intronic
chr19:51028739(-) A-I      intronic
chr19:51028731(-) A-I      intronic
chr19:51026008(-) A-I      intronic
chr19:51061658(-) A-I      intronic
chr19:51061683(-) A-I      intronic
chr19:51061681(-) A-I      intronic
chr19:51061669(-) A-I      intronic
chr19:51061665(-) A-I      intronic
chr19:51049163(-) A-I      intronic
chr19:51048132(-) A-I      intronic
chr19:51044575(-) A-I      intronic
chr19:51043738(-) A-I      intronic
chr19:51039662(-) A-I      intronic
chr19:51042107(-) A-I      intronic
chr19:51041855(-) A-I      intronic
chr19:51025985(-) A-I      intronic
chr19:51065258(-) A-I      intronic
chr19:51041934(-) A-I      intronic
chr19:51049141(-) A-I      intronic
chr19:51049180(-) A-I      intronic
chr19:51064848(-) A-I      intronic
chr19:51066024(-) A-I      intronic
chr19:51025313(-) A-I      intronic
chr19:51064811(-) A-I      intronic
chr19:51061758(-) A-I      intronic
chr19:51026822(-) A-I      intronic
chr19:51032962(-) A-I      intronic
chr19:51028919(-) A-I      intronic
chr19:51047425(-) A-I      intronic
chr19:51043662(-) A-I      intronic
chr19:51041389(-) A-I      intronic
chr19:51064868(-) A-I      intronic
chr19:51029241(-) A-I      intronic
chr19:51023222(-) A-I      intronic
chr19:51064779(-) A-I      intronic
chr19:51023083(-) A-I      intronic
chr19:51026755(-) A-I      intronic
chr19:51042307(-) A-I      intronic
chr19:51066135(-) A-I      intronic
chr19:51029882(-) A-I      intronic
chr19:51042266(-) A-I      intronic
chr19:51027210(-) A-I      intronic
chr19:51042098(-) A-I      intronic
chr19:51061664(-) A-I      intronic
chr19:51041933(-) A-I      intronic
chr19:51032940(-) A-I      intronic
chr19:51027533(-) A-I      intronic
chr19:51034204(-) A-I      intronic
chr19:51026787(-) A-I      intronic
chr19:51064854(-) A-I      intronic
chr19:51032950(-) A-I      intronic
chr19:51031137(-) A-I      intronic
chr19:51025203(-) A-I      intronic
chr19:51048420(-) A-I      intronic
chr19:51064824(-) A-I      intronic
chr19:51048832(-) A-I      intronic
chr19:51029903(-) A-I      intronic
chr19:51028950(-) A-I      intronic
chr19:51038594(-) A-I      intronic
chr19:51045990(-) A-I      intronic
chr19:51023401(-) A-I      intronic
chr19:51064285(-) A-I      intronic
chr19:51025211(-) A-I      intronic
chr19:51048220(-) A-I      intronic
chr19:51029915(-) A-I      intronic
chr19:51048755(-) A-I      intronic
chr19:51026919(-) A-I      intronic
chr19:51024781(-) A-I      intronic
chr19:51025160(-) A-I      intronic
chr19:51063248(-) A-I      intronic
chr19:51064844(-) A-I      intronic
chr19:51031577(-) A-I      intronic
chr19:51061550(-) A-I      intronic
chr19:51035314(-) A-I      intronic
chr19:51025340(-) A-I      intronic
chr19:51029194(-) A-I      intronic
chr19:51041458(-) A-I      intronic
chr19:51049335(-) A-I      intronic
chr19:51025391(-) A-I      intronic
chr19:51064265(-) A-I      intronic
chr19:51066190(-) A-I      intronic
chr19:51024774(-) A-I      intronic
chr19:51039590(-) A-I      intronic
chr19:51043814(-) A-I      intronic
chr19:51032914(-) A-I      intronic
chr19:51031740(-) A-I      intronic
chr19:51032899(-) A-I      intronic
chr19:51064909(-) A-I      intronic
chr19:51044576(-) A-I      intronic
chr19:51045872(-) A-I      intronic
chr19:51047066(-) A-I      intronic
chr19:51044329(-) A-I      intronic
chr19:51046852(-) A-I      intronic
chr19:51022877(-) A-I      intronic
chr19:51029255(-) A-I      intronic
chr19:51065149(-) A-I      intronic
chr19:51042179(-) A-I      intronic
chr19:51031177(-) A-I      intronic
chr19:51042022(-) A-I      intronic
chr19:51064826(-) A-I      intronic
chr19:51025268(-) A-I      intronic
chr19:51044400(-) A-I      intronic
chr19:51049137(-) A-I      intronic
chr19:51044492(-) A-I      intronic
chr19:51024955(-) A-I      intronic
chr19:51024022(-) A-I      intronic
chr19:51062604(-) A-I      intronic
chr19:51046924(-) A-I      intronic
chr19:51039502(-) A-I      intronic
chr19:51048247(-) A-I      intronic
chr19:51026813(-) A-I      intronic
chr19:51035477(-) A-I      intronic
chr19:51049227(-) A-I      intronic
chr19:51025068(-) A-I      intronic
chr19:51032805(-) A-I      intronic
chr19:51032879(-) A-I      intronic
chr19:51029843(-) A-I      intronic
chr19:51061711(-) A-I      intronic
chr19:51027202(-) A-I      intronic
chr19:51030183(-) A-I      intronic
chr19:51023207(-) A-I      intronic
chr19:51039528(-) A-I      intronic
chr19:51027786(-) A-I      intronic
chr19:51042314(-) A-I      intronic
chr19:51025917(-) A-I      intronic
chr19:51057336(-) A-I      intronic
chr19:51066136(-) A-I      intronic
chr19:51043655(-) A-I      intronic
chr19:51031700(-) A-I      intronic
chr19:51027641(-) A-I      intronic
chr19:51065135(-) A-I      intronic
chr19:51032896(-) A-I      intronic
chr19:51048107(-) A-I      intronic
chr19:51061733(-) A-I      intronic
chr19:51022968(-) A-I      intronic
chr19:51031293(-) A-I      intronic
chr19:51035485(-) A-I      intronic
chr19:51043649(-) A-I      intronic
chr19:51061590(-) A-I      intronic
chr19:51066094(-) A-I      intronic
chr19:51049113(-) A-I      intronic
chr19:51025413(-) A-I      intronic
chr19:51027710(-) A-I      intronic
chr19:51064843(-) A-I      intronic
chr19:51042390(-) A-I      intronic
chr19:51046006(-) A-I      intronic
chr19:51024822(-) A-I      intronic
chr19:51049177(-) A-I      intronic
chr19:51043886(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED LRRC4B
chr19:51023275(-) T-C intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase LRRC4B
chr19:51020187-51020188(-) m6A 3'UTR       24209618//24981863
chr19:51020254-51020255(-) m6A 3'UTR       24209618//25456834//24981863//27773536
chr19:51020364-51020365(-) m6A 3'UTR       24209618//25456834//24981863//27773536
chr19:51020377-51020378(-) m6A 3'UTR       24209618//25456834//24981863//27773536
chr19:51020448-51020449(-) m6A 3'UTR       24209618//25456834//27773536
chr19:51020573-51020574(-) m6A 3'UTR       24209618//25456834//27773536
chr19:51020654-51020655(-) m6A 3'UTR       24209618//25456834//24981863//27773536//22608085
chr19:51020667-51020668(-) m6A 3'UTR       24209618//25456834//24981863//27773536//22608085
chr19:51020718-51020719(-) m6A 3'UTR       24209618//25456834//24981863//27773536//22608085
chr19:51020753-51020754(-) m6A 3'UTR       24209618//25456834//24981863//27773536//22608085
chr19:51020881-51020882(-) m6A CDS       24209618//25456834//24981863//27773536//22608085
chr19:51020996-51020997(-) m6A CDS       24209618//25456834//24981863//27773536
chr19:51021029-51021030(-) m6A CDS       24209618//25456834//24981863//27773536
chr19:51021249-51021250(-) m6A CDS       24209618//25456834//24981863//27773536//22608085
chr19:51021269-51021270(-) m6A CDS       24209618//25456834//24981863//27773536//22608085
chr19:51021433-51021434(-) m6A CDS       24209618//25456834//24981863//27773536//22608085
chr19:51021489-51021490(-) m6A CDS       24209618//25456834//24981863//27773536//22608085
chr19:51021599-51021600(-) m6A CDS       24209618//25456834//24981863//27773536//22575960
chr19:51021650-51021651(-) m6A CDS       24209618//25456834//24981863//27773536//22575960//22608085
chr19:51021680-51021681(-) m6A CDS       24209618//25456834//24981863//22575960//22608085
chr19:51021854-51021855(-) m6A CDS       24209618//25456834//24981863//27773536//22608085
chr19:51021905-51021906(-) m6A CDS       25456834//24981863//27773536//22608085
chr19:51022244-51022245(-) m6A CDS       24209618//25456834//24981863//27773536//22575960//22608085
chr19:51022307-51022308(-) m6A CDS       24209618//25456834//24981863//27773536//22608085
chr19:51022406-51022407(-) m6A CDS       24209618//25456834//24981863//22608085
chr19:51022469-51022470(-) m6A CDS       24981863//22608085
chr19:51022610-51022611(-) m6A CDS       27773536
chr19:51022658-51022659(-) m6A CDS       27773536
chr19:51051820-51051821(-) m6A CDS       27773536
chr19:51051868-51051869(-) m6A CDS       27773536
chr19:51052103-51052104(-) m6A 5'UTR       24209618//27773536
chr19:51054286-51054287(-) m6A 5'UTR//intron       -
chr19:51071214-51071215(-) m6A 5'UTR       -

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate LRRC4B
Chromatin K562 cells     -
Exosome Blood     -
Nucleolus K562 cells     -
Nucleus K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: kshv-miR-K12-5-5p
Interactor2: LRRC4B

Evidence Support:


Prediction-Evidence miRanda//RNAHybrid//Targetscan
Support Database VmiReg

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