Detail Information

Basic Information:


  VIRBase ID:  

VHID00497067

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-5-5p:           ZNF577:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol kshv-miR-K12-5-5p ZNF577
miRBase
Accession/Entrez ID		 MIMAT0015218 84765
Organism Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV) Homo sapiens
Category miRNA mRNA
Alias - -

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR ZNF577
chr19:52388977(-) A-I      intronic
chr19:52387251(-) A-I      intronic
chr19:52388903(-) A-I      intronic
chr19:52388902(-) A-I      intronic
chr19:52370956(-) A-I      intronic
chr19:52369991(-) A-I      intronic
chr19:52368526(-) A-I      intronic
chr19:52374612(-) A-I      3'UTR
chr19:52368517(-) A-I      intronic
chr19:52368518(-) A-I      intronic
chr19:52388916(-) A-I      intronic
chr19:52368523(-) A-I      intronic
chr19:52368525(-) A-I      intronic
chr19:52368532(-) A-I      intronic
chr19:52369990(-) A-I      intronic
chr19:52368575(-) A-I      intronic
chr19:52368569(-) A-I      intronic
chr19:52368568(-) A-I      intronic
chr19:52368563(-) A-I      intronic
chr19:52364503(-) A-I      intronic
chr19:52386577(-) A-I      intronic
chr19:52386352(-) A-I      intronic
chr19:52386343(-) A-I      intronic
chr19:52385955(-) A-I      intronic
chr19:52385925(-) A-I      intronic
chr19:52385863(-) A-I      intronic
chr19:52388938(-) A-I      intronic
chr19:52388936(-) A-I      intronic
chr19:52388935(-) A-I      intronic
chr19:52370196(-) A-I      intronic
chr19:52370151(-) A-I      intronic
chr19:52370030(-) A-I      intronic
chr19:52369365(-) A-I      intronic
chr19:52369281(-) A-I      intronic
chr19:52388878(-) A-I      intronic
chr19:52388873(-) A-I      intronic
chr19:52388857(-) A-I      intronic
chr19:52387203(-) A-I      intronic
chr19:52387134(-) A-I      intronic
chr19:52387122(-) A-I      intronic
chr19:52387108(-) A-I      intronic
chr19:52369126(-) A-I      intronic
chr19:52374634(-) A-I      3'UTR
chr19:52370072(-) A-I      intronic
chr19:52364640(-) A-I      intronic
chr19:52361206(-) A-I      intronic
chr19:52385954(-) A-I      intronic
chr19:52370147(-) A-I      intronic
chr19:52387078(-) A-I      intronic
chr19:52378378(-) A-I      intronic
chr19:52370032(-) A-I      intronic
chr19:52368506(-) A-I      intronic
chr19:52378365(-) A-I      intronic
chr19:52368452(-) A-I      intronic
chr19:52364656(-) A-I      intronic
chr19:52385929(-) A-I      intronic
chr19:52364633(-) A-I      intronic
chr19:52364444(-) A-I      intronic
chr19:52364496(-) A-I      intronic
chr19:52387170(-) A-I      intronic
chr19:52370000(-) A-I      intronic
chr19:52374506(-) A-I      intronic
chr19:52374649(-) A-I      3'UTR
chr19:52370078(-) A-I      intronic
chr19:52374620(-) A-I      3'UTR
chr19:52374659(-) A-I      3'UTR
chr19:52387199(-) A-I      intronic
chr19:52374569(-) A-I      3'UTR
chr19:52368426(-) A-I      intronic
chr19:52374543(-) A-I      3'UTR
chr19:52368446(-) A-I      intronic
chr19:52374643(-) A-I      3'UTR
chr19:52374546(-) A-I      3'UTR
chr19:52361207(-) A-I      intronic
chr19:52370171(-) A-I      intronic
chr19:52374616(-) A-I      3'UTR
chr19:52370975(-) A-I      intronic
chr19:52370938(-) A-I      intronic
chr19:52369110(-) A-I      intronic
chr19:52368587(-) A-I      intronic
chr19:52389047(-) A-I      intronic
chr19:52369202(-) A-I      intronic
chr19:52386419(-) A-I      intronic
chr19:52388893(-) A-I      intronic
chr19:52369285(-) A-I      intronic
chr19:52382321(-) A-I      intronic
chr19:52374389(-) A-I      intronic
chr19:52364510(-) A-I      intronic
chr19:52364630(-) A-I      intronic
chr19:52369246(-) A-I      intronic
chr19:52370955(-) A-I      intronic
chr19:52369602(-) A-I      intronic
chr19:52369205(-) A-I      intronic
chr19:52368529(-) A-I      intronic
chr19:52368623(-) A-I      intronic
chr19:52360495(-) A-I      intronic
chr19:52368477(-) A-I      intronic
chr19:52364500(-) A-I      intronic
chr19:52374504(-) A-I      intronic
chr19:52385915(-) A-I      intronic
chr19:52364445(-) A-I      intronic
chr19:52374463(-) A-I      intronic
chr19:52378361(-) A-I      intronic
chr19:52360469(-) A-I      intronic
chr19:52386604(-) A-I      intronic
chr19:52370172(-) A-I      intronic
chr19:52374458(-) A-I      intronic
chr19:52370112(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED ZNF577
chr19:52364577(-) A-I intron -    15342557
chr19:52364582(-) A-I intron -    15342557
chr19:52364587(-) A-I intron -    15342557
chr19:52364630(-) A-I intron -    15342557
chr19:52364633(-) A-I intron -    15342557
chr19:52364656(-) A-I intron -    15342557
chr19:52374540(-) A-I intron -    15258596
chr19:52374543(-) A-I intron -    15258596
chr19:52374649(-) A-I exon 3'UTR    15258596
chr19:52374616(-) A-G exon 3'UTR    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase ZNF577
chr19:52375219-52375220(-) m6A 3'UTR//intron       27773535
chr19:52375281-52375282(-) m6A 3'UTR//intron       27773535
chr19:52375309-52375310(-) m6A 3'UTR//intron       27773535
chr19:52375410-52375411(-) m6A 3'UTR//intron       24209618//27773535//22608085
chr19:52375451-52375452(-) m6A 3'UTR//intron       24209618//24981863//27773535//22608085
chr19:52375479-52375480(-) m6A 3'UTR//intron       24209618//24981863//27773535//22608085
chr19:52375485-52375486(-) m6A 3'UTR//intron       24209618//24981863//27773535//22608085
chr19:52375644-52375645(-) m6A 3'UTR//intron       27773535
chr19:52375653-52375654(-) m6A 3'UTR//intron       27773535
chr19:52375673-52375674(-) m6A 3'UTR//intron       27773535
chr19:52375700-52375701(-) m6A 3'UTR//intron       27773535
chr19:52375871-52375872(-) m6A CDS//intron       27773535
chr19:52375919-52375920(-) m6A CDS//intron       24209618//25456834//27773535//22608085
chr19:52375962-52375963(-) m6A CDS//intron       24209618//25456834//24981863//27773535//22608085
chr19:52375978-52375979(-) m6A CDS//intron       24209618//25456834//24981863//27773535//22608085
chr19:52376010-52376011(-) m6A CDS//intron       24209618//25456834//24981863//27773535//22608085
chr19:52376017-52376018(-) m6A CDS//intron       24209618//25456834//24981863//27773535//22608085
chr19:52376036-52376037(-) m6A CDS//intron       24209618//24981863//27773535//22575960//22608085
chr19:52376075-52376076(-) m6A CDS//intron       24209618//24981863//27773535//22575960//22608085
chr19:52376104-52376105(-) m6A CDS//intron       24209618//24981863//27773535//22575960//22608085
chr19:52376119-52376120(-) m6A CDS//intron       24981863//27773535//22608085
chr19:52376129-52376130(-) m6A CDS//intron       24981863//27773535//22608085
chr19:52376186-52376187(-) m6A CDS//intron       27773535//22608085
chr19:52376270-52376271(-) m6A CDS//intron       27773535//22608085
chr19:52376297-52376298(-) m6A CDS//intron       24209618//27773535//22608085
chr19:52376307-52376308(-) m6A CDS//intron       24209618//27773535//22608085
chr19:52376326-52376327(-) m6A CDS//intron       24209618//27773535//22608085
chr19:52376372-52376373(-) m6A CDS//intron       24209618//27773535//27371828//22608085
chr19:52376438-52376439(-) m6A CDS//intron       24209618//25456834//24981863//27773535//27371828//22608085
chr19:52376465-52376466(-) m6A CDS//intron       24209618//25456834//24981863//27773535//27371828//22608085
chr19:52376522-52376523(-) m6A CDS//intron       24209618//25456834//24981863//27773535//27371828//22608085
chr19:52376539-52376540(-) m6A CDS//intron       24209618//25456834//24981863//27773535//27371828//22608085
chr19:52376623-52376624(-) m6A CDS//intron       25456834//24981863//27773535//27371828//22608085
chr19:52376662-52376663(-) m6A CDS//intron       25456834//24981863//27773535//27371828//22608085
chr19:52376690-52376691(-) m6A CDS//intron       25456834//24981863//27773535//27371828//22608085
chr19:52376707-52376708(-) m6A CDS//intron       25456834//24981863//27773535//27371828//22608085
chr19:52376774-52376775(-) m6A CDS//intron       25456834//27773535//22608085
chr19:52376831-52376832(-) m6A CDS//intron       27773535//22608085
chr19:52376866-52376867(-) m6A CDS//intron       27773535
chr19:52380580-52380581(-) m6A CDS//exon       27773535
chr19:52383996-52383997(-) m6A 5'UTR//exon//intron       -
chr19:52384108-52384109(-) m6A 5'UTR//exon//intron       -
chr19:52384113-52384114(-) m6A 5'UTR//exon//intron       22608085
chr19:52391200-52391201(-) m6A 5'UTR//exon//intron       24981863//22608085
chr19:52393957-52393958(-) m6A intron       25456834//24981863//27773535//22608085
chr19:52394047-52394048(-) m6A intron       24209618//25456834//24981863//27773535//22608085
chr19:52394104-52394105(-) m6A 5'UTR       24209618//25456834//24981863//27773535//22608085
chr19:52394121-52394122(-) m6A 5'UTR       24209618//25456834//24981863//27773535//22608085
chr19:52394145-52394146(-) m6A 5'UTR       24209618//25456834//24981863//27773535//22608085
chr19:52394188-52394189(-) m6A 5'UTR       24209618//25456834//24981863//27773535//22608085

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate ZNF577
Exosome Blood     -

Interaction Network (The top 100 interactions):


Interactor1: kshv-miR-K12-5-5p
Interactor2: ZNF577

Evidence Support:


Prediction-Evidence miRanda//RNAHybrid//Targetscan
Support Database VmiReg

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