Basic Information:

  VIRBase ID:  

VHID00497046

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-5-5p:  MIMAT0015218          DNAJC30:  NM_032317     

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Interactor Information:

	Interactor1	Interactor2
Symbol	kshv-miR-K12-5-5p	DNAJC30
miRBase Accession/Entrez ID	MIMAT0015218	84277
Organism	Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	WBSCR18

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	DNAJC30	chr7:73096197(-) A-I      3'UTR chr7:73096227(-) A-I      3'UTR chr7:73096202(-) A-I      3'UTR chr7:73096172(-) A-I      3'UTR chr7:73096106(-) A-I      3'UTR chr7:73096123(-) A-I      3'UTR chr7:73096184(-) A-I      3'UTR chr7:73096201(-) A-I      3'UTR chr7:73096152(-) A-I      3'UTR chr7:73096120(-) A-I      3'UTR chr7:73096171(-) A-I      3'UTR

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	DNAJC30	chr7:73096184(-) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	DNAJC30	chr7:73095413-73095414(-) m6A 3'UTR       27773535 chr7:73095492-73095493(-) m6A 3'UTR       24981863//27773535 chr7:73096563-73096564(-) m6A 3'UTR       24981863//22608085 chr7:73096600-73096601(-) m6A 3'UTR       24981863//27773535//22608085 chr7:73096744-73096745(-) m6A 3'UTR       24284625//24981863//27773535//22575960//22608085 chr7:73096959-73096960(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22608085 chr7:73097002-73097003(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22608085 chr7:73097130-73097131(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr7:73097231-73097232(-) m6A CDS       24284625//25456834//24981863//27371828//27773536//22575960//22608085 chr7:73097314-73097315(-) m6A CDS       24284625//25456834//24981863//27371828//27773536//22608085 chr7:73097387-73097388(-) m6A CDS       24981863//27371828//27773536//22608085 chr7:73097397-73097398(-) m6A CDS       27773536 chr7:73097517-73097518(-) m6A CDS       24284625//24981863 chr7:73097644-73097645(-) m6A CDS       24284625//24981863//27773535//27371828//22575960//22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	DNAJC30	Cytoplasm Nasopharyngeal carcinoma cells     20498841 Exosome Blood     - Nucleolus K562 cells     - Nucleus Nasopharyngeal carcinoma cells     20498841

Interaction Network (The top 100 interactions):

Interactor1: kshv-miR-K12-5-5p
Interactor2: DNAJC30

Evidence Support:

Prediction-Evidence	miRanda//RNAHybrid//Targetscan
Support Database	VmiReg