Basic Information:

  VIRBase ID:  

VHID00496868

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-5-5p:  MIMAT0015218          TINAGL1:  NM_022164     

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Interactor Information:

	Interactor1	Interactor2
Symbol	kshv-miR-K12-5-5p	TINAGL1
miRBase Accession/Entrez ID	MIMAT0015218	64129
Organism	Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	ARG1//LCN7//LIECG3//TINAGRP

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	TINAGL1	chr1:32047721(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	TINAGL1	chr1:32051454-32051455(+) m6A CDS//exon       24284625 chr1:32052273-32052274(+) m6A exon//intron       24209618 chr1:32052563-32052564(+) m6A CDS//exon       24284625//24209618//25456834 chr1:32052764-32052765(+) m6A 3'UTR//exon       24284625//24209618//25456834 chr1:32052781-32052782(+) m6A 3'UTR//exon       24284625//24209618//25456834 chr1:32052862-32052863(+) m6A 3'UTR//exon       24284625//24209618//25456834 chr1:32052877-32052878(+) m6A 3'UTR//exon       24284625//24209618//25456834 chr1:32052941-32052942(+) m6A 3'UTR//exon       24284625//24209618 chr1:32053055-32053056(+) m6A 3'UTR//exon       24209618 chr1:32053140-32053141(+) m6A 3'UTR//exon       24209618

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	TINAGL1	Cytosol HeLa-S3 cells     - Exosome Blood     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: kshv-miR-K12-5-5p
Interactor2: TINAGL1

Evidence Support:

Prediction-Evidence	miRanda//PITA//RNAHybrid//Targetscan
Support Database	VmiReg