Basic Information:

  VIRBase ID:  

VHID00496792

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-5-5p:  MIMAT0015218          PITHD1:  NM_020362     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	kshv-miR-K12-5-5p	PITHD1
miRBase Accession/Entrez ID	MIMAT0015218	57095
Organism	Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	C1orf128//HT014//TXNL1CL

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	PITHD1	chr1:24111854(+) A-I      intronic chr1:24111868(+) A-I      intronic chr1:24111818(+) A-I      intronic chr1:24108829(+) A-I      intronic chr1:24109191(+) A-I      intronic chr1:24109209(+) A-I      intronic chr1:24109217(+) A-I      intronic chr1:24109302(+) A-I      intronic chr1:24109369(+) A-I      intronic chr1:24109604(+) A-I      intronic chr1:24110221(+) A-I      intronic chr1:24110912(+) A-I      intronic chr1:24110915(+) A-I      intronic chr1:24107117(+) A-I      intronic chr1:24107125(+) A-I      intronic chr1:24107910(+) A-I      intronic chr1:24110929(+) A-I      intronic chr1:24110937(+) A-I      intronic chr1:24111232(+) A-I      intronic chr1:24111821(+) A-I      intronic chr1:24111823(+) A-I      intronic chr1:24107178(+) A-I      intronic chr1:24107189(+) A-I      intronic chr1:24107245(+) A-I      intronic chr1:24107800(+) A-I      intronic chr1:24107806(+) A-I      intronic chr1:24107856(+) A-I      intronic chr1:24111844(+) A-I      intronic chr1:24109642(+) A-I      intronic chr1:24109653(+) A-I      intronic chr1:24109730(+) A-I      intronic chr1:24109734(+) A-I      intronic chr1:24109739(+) A-I      intronic chr1:24110071(+) A-I      intronic chr1:24110083(+) A-I      intronic chr1:24107937(+) A-I      intronic chr1:24108645(+) A-I      intronic chr1:24108708(+) A-I      intronic chr1:24108722(+) A-I      intronic chr1:24108770(+) A-I      intronic chr1:24108789(+) A-I      intronic chr1:24108815(+) A-I      intronic chr1:24108821(+) A-I      intronic chr1:24111733(+) A-I      5'UTR chr1:24108744(+) A-I      intronic chr1:24108651(+) A-I      intronic chr1:24107179(+) A-I      intronic chr1:24109192(+) A-I      intronic chr1:24110134(+) A-I      intronic chr1:24107824(+) A-I      intronic chr1:24110805(+) A-I      intronic chr1:24109672(+) A-I      intronic chr1:24108653(+) A-I      intronic chr1:24111260(+) A-I      intronic chr1:24107767(+) A-I      intronic chr1:24107349(+) A-I      intronic chr1:24108858(+) A-I      intronic chr1:24108766(+) A-I      intronic chr1:24109233(+) A-I      intronic chr1:24108778(+) A-I      intronic chr1:24109131(+) A-I      intronic chr1:24107833(+) A-I      intronic chr1:24107838(+) A-I      intronic chr1:24109171(+) A-I      intronic chr1:24109178(+) A-I      intronic chr1:24110042(+) A-I      intronic chr1:24107518(+) A-I      intronic chr1:24109123(+) A-I      intronic chr1:24111822(+) A-I      intronic chr1:24107842(+) A-I      intronic chr1:24107832(+) A-I      intronic chr1:24110166(+) A-I      intronic chr1:24109218(+) A-I      intronic chr1:24109071(+) A-I      intronic chr1:24110206(+) A-I      intronic chr1:24111997(+) A-I      intronic chr1:24107186(+) A-I      intronic chr1:24109161(+) A-I      intronic chr1:24109150(+) A-I      intronic chr1:24109652(+) A-I      intronic chr1:24108654(+) A-I      intronic chr1:24110078(+) A-I      intronic chr1:24108864(+) A-I      intronic chr1:24107116(+) A-I      intronic chr1:24109057(+) A-I      intronic chr1:24108671(+) A-I      intronic chr1:24109262(+) A-I      intronic chr1:24109000(+) A-I      intronic chr1:24108733(+) A-I      intronic chr1:24109345(+) A-I      intronic chr1:24111862(+) A-I      intronic chr1:24109195(+) A-I      intronic chr1:24107666(+) A-I      intronic chr1:24110081(+) A-I      intronic chr1:24110500(+) A-I      intronic chr1:24107850(+) A-I      intronic chr1:24109050(+) A-I      intronic chr1:24109698(+) A-I      intronic chr1:24109694(+) A-I      intronic chr1:24107903(+) A-I      intronic chr1:24107187(+) A-I      intronic chr1:24108824(+) A-I      intronic chr1:24107788(+) A-I      intronic chr1:24109258(+) A-I      intronic chr1:24109010(+) A-I      intronic chr1:24107471(+) A-I      intronic chr1:24107491(+) A-I      intronic chr1:24109626(+) A-I      intronic chr1:24108859(+) A-I      intronic chr1:24109494(+) A-I      intronic chr1:24109186(+) A-I      intronic chr1:24111218(+) A-I      intronic chr1:24110219(+) A-I      intronic chr1:24111234(+) A-I      intronic chr1:24107492(+) A-I      intronic chr1:24108756(+) A-I      intronic chr1:24109960(+) A-I      intronic chr1:24107436(+) A-I      intronic chr1:24107902(+) A-I      intronic chr1:24107437(+) A-I      intronic chr1:24108753(+) A-I      intronic chr1:24107777(+) A-I      intronic chr1:24107347(+) A-I      intronic chr1:24111796(+) A-I      5'UTR chr1:24111727(+) A-I      5'UTR chr1:24111728(+) A-I      5'UTR chr1:24107868(+) A-I      intronic chr1:24111754(+) A-I      5'UTR chr1:24111780(+) A-I      5'UTR chr1:24111797(+) A-I      5'UTR chr1:24110180(+) A-I      intronic chr1:24108762(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	PITHD1	chr1:24108651(+) A-G intron -    22484847 chr1:24108671(+) A-G intron -    22484847 chr1:24108753(+) A-G intron -    22484847 chr1:24108756(+) A-G intron -    22484847 chr1:24108762(+) A-G intron -    22484847 chr1:24108778(+) A-G intron -    22484847 chr1:24109123(+) A-G intron -    22484847 chr1:24109150(+) A-G intron -    22484847 chr1:24109192(+) A-G intron -    22484847 chr1:24109195(+) A-G intron -    22484847 chr1:24109218(+) A-G intron -    22484847 chr1:24109345(+) A-G intron -    22484847 chr1:24109626(+) A-G intron -    22484847 chr1:24109694(+) A-G intron -    22484847 chr1:24110042(+) A-G intron -    22484847 chr1:24110081(+) A-G intron -    22484847 chr1:24110134(+) A-G intron -    22484847 chr1:24110180(+) A-G intron -    22484847 chr1:24110805(+) A-G intron -    22484847 chr1:24111796(+) A-G intron -    22484847 chr1:24111797(+) A-G intron -    22484847 chr1:24111862(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	PITHD1	chr1:24112854-24112855(+) m6A CDS       - chr1:24112907-24112908(+) m6A CDS       - chr1:24113819-24113820(+) m6A CDS       24284625//24981863//22575960//22608085 chr1:24113848-24113849(+) m6A CDS       24284625//24981863//22575960//22608085 chr1:24113931-24113932(+) m6A 3'UTR       24284625//24981863//22575960//22608085 chr1:24114007-24114008(+) m6A 3'UTR       24284625//24981863//22575960 chr1:24114061-24114062(+) m6A 3'UTR       22575960 chr1:24114716-24114717(+) m6A 3'UTR       27773535

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	PITHD1	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Cytosol K562 cells     - Exosome Blood     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: kshv-miR-K12-5-5p
Interactor2: PITHD1

Evidence Support:

Prediction-Evidence	miRanda//PITA//RNAHybrid//Targetscan
Support Database	VmiReg