Detail Information

Basic Information:


  VIRBase ID:  

VHID00496716

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-5-5p:           TRIM62:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol kshv-miR-K12-5-5p TRIM62
miRBase
Accession/Entrez ID		 MIMAT0015218 55223
Organism Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV) Homo sapiens
Category miRNA mRNA
Alias - DEAR1

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR TRIM62
chr1:33639921(-) A-I      intronic
chr1:33615194(-) A-I      intronic
chr1:33615180(-) A-I      intronic
chr1:33615335(-) A-I      intronic
chr1:33639964(-) A-I      intronic
chr1:33639967(-) A-I      intronic
chr1:33639978(-) A-I      intronic
chr1:33615196(-) A-I      intronic
chr1:33614914(-) A-I      intronic
chr1:33620317(-) A-I      intronic
chr1:33620336(-) A-I      intronic
chr1:33635668(-) A-I      intronic
chr1:33624718(-) A-I      intronic
chr1:33635849(-) A-I      intronic
chr1:33620546(-) A-I      intronic
chr1:33635682(-) A-I      intronic
chr1:33620438(-) A-I      intronic
chr1:33620150(-) A-I      intronic
chr1:33614959(-) A-I      intronic
chr1:33623388(-) A-I      intronic
chr1:33640419(-) A-I      intronic
chr1:33620287(-) A-I      intronic
chr1:33635680(-) A-I      intronic
chr1:33623341(-) A-I      intronic
chr1:33639960(-) A-I      intronic
chr1:33620144(-) A-I      intronic
chr1:33620945(-) A-I      intronic
chr1:33637437(-) A-I      intronic
chr1:33620135(-) A-I      intronic
chr1:33620290(-) A-I      intronic
chr1:33620312(-) A-I      intronic
chr1:33620277(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED TRIM62
chr1:33617952(-) T-C intron -    22484847
chr1:33620135(-) A-G intron -    22484847
chr1:33620144(-) A-G intron -    22484847
chr1:33620150(-) A-G intron -    22484847
chr1:33620305(-) T-C intron -    22484847
chr1:33620439(-) T-C intron -    22484847
chr1:33620440(-) T-C intron -    22484847
chr1:33620785(-) T-C intron -    22484847
chr1:33637437(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase TRIM62
chr1:33611186-33611187(-) m6A 3'UTR       24284625//25456834//24981863//27371828
chr1:33611299-33611300(-) m6A 3'UTR       24284625//25456834//24981863//27371828
chr1:33611320-33611321(-) m6A 3'UTR       24284625//25456834//24981863//27371828
chr1:33611391-33611392(-) m6A 3'UTR       25456834
chr1:33611632-33611633(-) m6A 3'UTR       24284625
chr1:33611725-33611726(-) m6A 3'UTR       24284625//24209618//25456834//24981863
chr1:33611745-33611746(-) m6A 3'UTR       24284625//24209618//25456834//24981863
chr1:33611807-33611808(-) m6A 3'UTR       24284625//24981863
chr1:33611837-33611838(-) m6A 3'UTR       24981863
chr1:33612233-33612234(-) m6A 3'UTR       27773535
chr1:33612357-33612358(-) m6A 3'UTR       24284625//27773535
chr1:33612391-33612392(-) m6A 3'UTR       24284625//24209618//27773535
chr1:33612472-33612473(-) m6A 3'UTR       24284625//24981863//27773535
chr1:33612604-33612605(-) m6A 3'UTR       24284625//24981863
chr1:33612673-33612674(-) m6A 3'UTR       24284625//24981863
chr1:33612699-33612700(-) m6A 3'UTR       24284625//25456834//24981863//27371828//22608085
chr1:33612705-33612706(-) m6A 3'UTR       24284625//25456834//24981863//27371828//22608085
chr1:33612745-33612746(-) m6A 3'UTR       24284625//25456834//24981863//27371828//22608085
chr1:33612761-33612762(-) m6A 3'UTR       24284625//25456834//24981863//27371828//22608085
chr1:33612943-33612944(-) m6A CDS       24284625
chr1:33612973-33612974(-) m6A CDS       24284625
chr1:33613124-33613125(-) m6A CDS       27371828
chr1:33613219-33613220(-) m6A CDS       25456834//27371828
chr1:33613306-33613307(-) m6A CDS       27371828
chr1:33623864-33623865(-) m6A CDS       27371828
chr1:33623927-33623928(-) m6A CDS       24284625//27371828
chr1:33623946-33623947(-) m6A CDS       24284625//27371828
chr1:33625334-33625335(-) m6A CDS//exon       24284625//27371828
chr1:33625441-33625442(-) m6A CDS//exon       24284625//27371828
chr1:33646974-33646975(-) m6A CDS//exon       25456834//27371828
chr1:33647253-33647254(-) m6A 5'UTR//intron       24284625

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate TRIM62
Exosome Blood     -
Nucleolus K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: kshv-miR-K12-5-5p
Interactor2: TRIM62

Evidence Support:


Prediction-Evidence miRanda//PITA//RNAHybrid//Targetscan
Support Database VmiReg

Starting a new search, please wait ...