Detail Information

Basic Information:


  VIRBase ID:  

VHID00496648

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-5-5p:           YIPF1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol kshv-miR-K12-5-5p YIPF1
miRBase
Accession/Entrez ID		 MIMAT0015218 54432
Organism Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV) Homo sapiens
Category miRNA mRNA
Alias - DJ167A19.1//FinGER1

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR YIPF1
chr1:54324588(-) A-I      intronic
chr1:54323530(-) A-I      intronic
chr1:54324476(-) A-I      intronic
chr1:54324477(-) A-I      intronic
chr1:54324502(-) A-I      intronic
chr1:54324503(-) A-I      intronic
chr1:54324504(-) A-I      intronic
chr1:54324505(-) A-I      intronic
chr1:54324521(-) A-I      intronic
chr1:54329470(-) A-I      intronic
chr1:54323532(-) A-I      intronic
chr1:54324456(-) A-I      intronic
chr1:54339432(-) A-I      intronic
chr1:54343689(-) A-I      intronic
chr1:54343682(-) A-I      intronic
chr1:54343658(-) A-I      intronic
chr1:54353885(-) A-I      intronic
chr1:54353777(-) A-I      intronic
chr1:54353759(-) A-I      intronic
chr1:54352881(-) A-I      intronic
chr1:54352770(-) A-I      intronic
chr1:54346753(-) A-I      intronic
chr1:54346751(-) A-I      intronic
chr1:54343617(-) A-I      intronic
chr1:54343727(-) A-I      intronic
chr1:54325180(-) A-I      intronic
chr1:54325145(-) A-I      intronic
chr1:54325111(-) A-I      intronic
chr1:54324385(-) A-I      intronic
chr1:54341005(-) A-I      intronic
chr1:54335657(-) A-I      intronic
chr1:54335577(-) A-I      intronic
chr1:54335643(-) A-I      intronic
chr1:54335613(-) A-I      intronic
chr1:54329510(-) A-I      intronic
chr1:54343711(-) A-I      intronic
chr1:54343706(-) A-I      intronic
chr1:54329521(-) A-I      intronic
chr1:54329518(-) A-I      intronic
chr1:54343730(-) A-I      intronic
chr1:54324440(-) A-I      intronic
chr1:54324386(-) A-I      intronic
chr1:54335642(-) A-I      intronic
chr1:54329480(-) A-I      intronic
chr1:54324472(-) A-I      intronic
chr1:54346836(-) A-I      intronic
chr1:54324464(-) A-I      intronic
chr1:54325311(-) A-I      intronic
chr1:54340970(-) A-I      intronic
chr1:54325188(-) A-I      intronic
chr1:54323473(-) A-I      intronic
chr1:54335905(-) A-I      intronic
chr1:54352885(-) A-I      intronic
chr1:54352890(-) A-I      intronic
chr1:54353742(-) A-I      intronic
chr1:54324416(-) A-I      intronic
chr1:54340943(-) A-I      intronic
chr1:54324439(-) A-I      intronic
chr1:54324551(-) A-I      intronic
chr1:54327524(-) A-I      intronic
chr1:54353751(-) A-I      intronic
chr1:54324484(-) A-I      intronic
chr1:54341120(-) A-I      intronic
chr1:54353032(-) A-I      intronic
chr1:54336576(-) A-I      intronic
chr1:54324535(-) A-I      intronic
chr1:54353787(-) A-I      intronic
chr1:54319666(-) A-I      intronic
chr1:54352946(-) A-I      intronic
chr1:54336468(-) A-I      intronic
chr1:54324446(-) A-I      intronic
chr1:54335235(-) A-I      intronic
chr1:54335959(-) A-I      intronic
chr1:54336067(-) A-I      intronic
chr1:54324410(-) A-I      intronic
chr1:54353733(-) A-I      intronic
chr1:54336467(-) A-I      intronic
chr1:54329569(-) A-I      intronic
chr1:54336642(-) A-I      intronic
chr1:54324436(-) A-I      intronic
chr1:54344965(-) A-I      intronic
chr1:54344966(-) A-I      intronic
chr1:54335710(-) A-I      intronic
chr1:54323429(-) A-I      intronic
chr1:54323628(-) A-I      intronic
chr1:54331652(-) A-I      intronic
chr1:54331654(-) A-I      intronic
chr1:54323592(-) A-I      intronic
chr1:54349517(-) A-I      intronic
chr1:54324482(-) A-I      intronic
chr1:54340966(-) A-I      intronic
chr1:54324380(-) A-I      intronic
chr1:54343654(-) A-I      intronic
chr1:54324555(-) A-I      intronic
chr1:54324546(-) A-I      intronic
chr1:54352935(-) A-I      intronic
chr1:54335982(-) A-I      intronic
chr1:54324429(-) A-I      intronic
chr1:54343671(-) A-I      intronic
chr1:54336563(-) A-I      intronic
chr1:54336100(-) A-I      intronic
chr1:54325189(-) A-I      intronic
chr1:54352891(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED YIPF1
chr1:54324472(-) A-G intron -    22484847
chr1:54324482(-) A-G intron -    22484847
chr1:54324546(-) A-G intron -    22484847
chr1:54324551(-) A-G intron -    22484847
chr1:54325311(-) A-G intron -    22484847
chr1:54335982(-) A-G intron -    22484847
chr1:54336642(-) A-G intron -    22484847
chr1:54346836(-) A-G intron -    22484847
chr1:54352885(-) A-G intron -    22484847
chr1:54352890(-) A-G intron -    22484847
chr1:54352891(-) A-G intron -    22484847
chr1:54352935(-) A-G intron -    22484847
chr1:54352946(-) A-G intron -    22484847
chr1:54353032(-) A-G intron -    22484847
chr1:54353733(-) A-G intron -    22484847
chr1:54353787(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase YIPF1
chr1:54317437-54317438(-) m6A 3'UTR       24284625//24981863//28052920//27773535//22608085
chr1:54317445-54317446(-) m6A 3'UTR       24284625//24981863//28052920//27773535//22608085
chr1:54317502-54317503(-) m6A 3'UTR       24284625//24209618//24981863//28052920//27773535//22608085
chr1:54317511-54317512(-) m6A 3'UTR       24284625//24209618//24981863//28052920//27773535//22608085
chr1:54317564-54317565(-) m6A 3'UTR       24284625//24209618//24981863//28052920//27773535//22608085
chr1:54317606-54317607(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085
chr1:54317707-54317708(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085
chr1:54354622-54354623(-) m6A 5'UTR//exon//intron       27773535
chr1:54354926-54354927(-) m6A 5'UTR//exon//intron       27773535
chr1:54354980-54354981(-) m6A 5'UTR//exon//intron       27773535
chr1:54355019-54355020(-) m6A 5'UTR//exon//intron       27773535

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate YIPF1
Chromatin K562 cells     -
Exosome Blood     -
Nucleolus K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: kshv-miR-K12-5-5p
Interactor2: YIPF1

Evidence Support:


Prediction-Evidence miRanda//PITA//RNAHybrid//Targetscan
Support Database VmiReg

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