Basic Information:

  VIRBase ID:  

VHID00496604

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-5-5p:  MIMAT0015218          APH1A:  NR_045034     

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Interactor Information:

	Interactor1	Interactor2
Symbol	kshv-miR-K12-5-5p	APH1A
miRBase Accession/Entrez ID	MIMAT0015218	51107
Organism	Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	6530402N02Rik//APH-1//APH-1A//CGI-78

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	APH1A	chr1:150237888-150237889(-) m6A 3'UTR       27773535 chr1:150237937-150237938(-) Y 3'UTR       26075521 chr1:150237973-150237974(-) m6A 3'UTR       27773535 chr1:150238086-150238087(-) m6A 3'UTR       24284625 chr1:150238101-150238102(-) m6A 3'UTR       24284625 chr1:150238136-150238137(-) m6A 3'UTR       24284625 chr1:150238275-150238276(-) m6A 3'UTR       24981863 chr1:150238303-150238304(-) m6A 3'UTR       24284625//24981863 chr1:150238336-150238337(-) m6A 3'UTR       24284625//24981863 chr1:150238341-150238342(-) m6A 3'UTR       24284625//24981863 chr1:150238425-150238426(-) m6A 3'UTR       24284625//24981863//26404942//22575960 chr1:150238450-150238451(-) m6A 3'UTR       24284625//24981863//26404942//22575960 chr1:150238513-150238514(-) m6A 3'UTR       24284625//24981863//22575960 chr1:150238524-150238525(-) m6A 3'UTR       24284625//24981863//27773535//22575960 chr1:150238533-150238534(-) m6A 3'UTR//CDS       24284625//24981863//27773535//22575960 chr1:150238578-150238579(-) m6A 3'UTR//CDS       24284625//24981863//27773535//22575960 chr1:150238617-150238618(-) m6A 3'UTR//intron       24284625//27773535//22575960 chr1:150238657-150238658(-) m6A 3'UTR//intron       24284625//27773535//22575960 chr1:150238677-150238678(-) m6A 3'UTR//intron       24284625//27773535//22575960 chr1:150238912-150238913(-) m6A 3'UTR//exon//intron       24284625//25456834//24981863//27773535//27371828 chr1:150238925-150238926(-) m6A CDS//exon//intron       24284625//25456834//24981863//27773535//27371828 chr1:150239045-150239046(-) m6A CDS//exon       24284625//27773535 chr1:150241179-150241180(-) Y CDS//exon       26075521 chr1:150241283-150241284(-) m6A 5'UTR//exon       - chr1:150241384-150241385(-) m6A 5'UTR//exon       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	APH1A	Chromatin K562 cells     - Cytosol K562 cells     - Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Membrane HCC cell line (HepG2)     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HeLa-S3 cells|K562 cells     - Ribosome HEK-293 cells     22199352 Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: kshv-miR-K12-5-5p
Interactor2: APH1A

Evidence Support:

Prediction-Evidence	miRanda//PITA//RNAHybrid//Targetscan
Support Database	VmiReg