Basic Information:

  VIRBase ID:  

VHID00496227

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-5-5p:  MIMAT0015218          MAP3K6:  NM_001297609     

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Interactor Information:

	Interactor1	Interactor2
Symbol	kshv-miR-K12-5-5p	MAP3K6
miRBase Accession/Entrez ID	MIMAT0015218	9064
Organism	Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	ASK2//MAPKKK6//MEKK6

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	MAP3K6	chr1:27681684-27681685(-) m6A 3'UTR       25456834//24981863//27773535//27371828 chr1:27681689-27681690(-) m6A 3'UTR       25456834//24981863//27773535//27371828 chr1:27681703-27681704(-) m6A 3'UTR       25456834//24981863//27773535//27371828 chr1:27681732-27681733(-) m6A 3'UTR       25456834//24981863//27773535//27371828//22608085 chr1:27681751-27681752(-) m6A 3'UTR       25456834//24981863//27773535//27371828//22608085 chr1:27681792-27681793(-) m6A 3'UTR       25456834//24981863//27773535//27371828//27773536//22608085 chr1:27681824-27681825(-) m6A 3'UTR//CDS       25456834//24981863//27773535//27371828//27773536//22608085 chr1:27681853-27681854(-) m6A 3'UTR//exon//intron       27773535//27371828 chr1:27681887-27681888(-) m6A CDS//exon//intron       27773535 chr1:27682546-27682547(-) m6A CDS//exon//intron       27371828 chr1:27682574-27682575(-) m6A CDS//exon//intron       27371828 chr1:27682905-27682906(-) m6A CDS//exon//intron       27371828 chr1:27683087-27683088(-) m6A CDS//exon//intron       24284625//25456834//27371828 chr1:27683185-27683186(-) m6A CDS//exon//intron       24284625 chr1:27683364-27683365(-) m6A exon//intron       25456834//27371828//27773536 chr1:27683404-27683405(-) m6A exon//intron       25456834//27371828//27773536 chr1:27683436-27683437(-) m6A exon//intron       25456834//27371828 chr1:27683503-27683504(-) m6A CDS//exon//intron       25456834 chr1:27684047-27684048(-) m6A CDS//exon       27773536 chr1:27684756-27684757(-) m6A CDS       - chr1:27684977-27684978(-) m6A CDS       - chr1:27684990-27684991(-) m6A CDS       - chr1:27687201-27687202(-) m6A CDS       24209618 chr1:27687466-27687467(-) m6A CDS       - chr1:27690546-27690547(-) m6A CDS       27773536 chr1:27690559-27690560(-) m6A CDS       27773536 chr1:27693259-27693260(-) m6A 5'UTR       24981863//27773536 chr1:27693292-27693293(-) m6A 5'UTR       27773536//22575960 chr1:27693300-27693301(-) m6A 5'UTR       27773536//22575960 chr1:27693320-27693321(-) m6A 5'UTR       27773536//22575960

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	MAP3K6	Chromatin K562 cells     - Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleoplasm K562 cells     - Nucleus HeLa-S3 cells     -

Interaction Network (The top 100 interactions):

Interactor1: kshv-miR-K12-5-5p
Interactor2: MAP3K6

Evidence Support:

Prediction-Evidence	miRanda//PITA//RNAHybrid//Targetscan
Support Database	VmiReg