Basic Information:

  VIRBase ID:  

VHID00496139

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-5-5p:  MIMAT0015218          VCP:  NM_001354927     

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Interactor Information:

	Interactor1	Interactor2
Symbol	kshv-miR-K12-5-5p	VCP
miRBase Accession/Entrez ID	MIMAT0015218	7415
Organism	Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	CDC48//FTDALS6//p97//TERA

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	VCP	chr9:35058515(-) A-I      intronic chr9:35066380(-) A-I      intronic chr9:35066350(-) A-I      intronic chr9:35066165(-) A-I      intronic chr9:35064453(-) A-I      intronic chr9:35065113(-) A-I      intronic chr9:35066015(-) A-I      intronic chr9:35058516(-) A-I      intronic chr9:35066348(-) A-I      intronic chr9:35064509(-) A-I      intronic chr9:35066040(-) A-I      intronic chr9:35066036(-) A-I      intronic chr9:35066076(-) A-I      intronic chr9:35066183(-) A-I      intronic chr9:35066184(-) A-I      intronic chr9:35066210(-) A-I      intronic chr9:35066499(-) A-I      intronic chr9:35066503(-) A-I      intronic chr9:35065138(-) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	VCP	chr9:35056078-35056079(-) m6A 3'UTR       27773535 chr9:35056149-35056150(-) m6A 3'UTR       24284625//27773535 chr9:35056255-35056256(-) m6A 3'UTR       24284625//24981863//26404942//27773535//22575960//22608085 chr9:35056373-35056374(-) m6A 3'UTR       24284625//24981863//27773535//22575960//22608085 chr9:35056518-35056519(-) m6A 3'UTR       24284625//24981863//27773535//22608085 chr9:35056583-35056584(-) m6A 3'UTR       24284625//24981863//27773535 chr9:35056609-35056610(-) m6A 3'UTR       24284625//24981863//27773535 chr9:35056631-35056632(-) m6A 3'UTR       24284625//27773535 chr9:35056805-35056806(-) m6A 3'UTR       26404942//27773535//22575960 chr9:35056822-35056823(-) m6A 3'UTR       27773535//22575960 chr9:35056937-35056938(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr9:35056966-35056967(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr9:35056992-35056993(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr9:35057033-35057034(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr9:35057074-35057075(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr9:35057138-35057139(-) m6A CDS//exon       24284625//24209618//24981863//26404942//27773535//22575960 chr9:35057204-35057205(-) m6A CDS//exon       24209618//26404942//27773535//22575960 chr9:35057406-35057407(-) m6A CDS//exon       27773535//22575960 chr9:35057605-35057606(-) m6A exon//intron       24981863//27773535 chr9:35057613-35057614(-) m6A exon//intron       24981863//27773535 chr9:35057819-35057820(-) m6A exon//intron       24981863//26404942 chr9:35059077-35059078(-) m6A CDS//exon       24981863//26404942//22575960 chr9:35059208-35059209(-) m6A CDS//exon       26404942//22575960 chr9:35059842-35059843(-) m6A exon//intron       22575960 chr9:35060846-35060847(-) m6A CDS//exon       26404942//27773535 chr9:35060880-35060881(-) m6A CDS//exon       26404942//27773535 chr9:35061042-35061043(-) m6A CDS//exon       26404942//27773535//22575960 chr9:35061064-35061065(-) m6A CDS//exon       26404942//22575960 chr9:35061163-35061164(-) m6A CDS//exon       26404942 chr9:35061576-35061577(-) m6A CDS//exon       26404942 chr9:35061583-35061584(-) m6A CDS//exon       26404942 chr9:35061607-35061608(-) m6A CDS//exon       26404942 chr9:35062033-35062034(-) m6A CDS//exon       24981863//26404942 chr9:35062134-35062135(-) m6A CDS//exon       24981863//26404942//22575960 chr9:35062151-35062152(-) m6A exon//intron       24981863//26404942//22575960 chr9:35063031-35063032(-) m6A CDS//exon       26404942 chr9:35063040-35063041(-) m6A CDS//exon       26404942 chr9:35063050-35063051(-) m6A CDS//exon       26404942 chr9:35064183-35064184(-) m6A CDS//exon       26404942 chr9:35064195-35064196(-) m6A CDS//exon       26404942//22575960 chr9:35065287-35065288(-) m6A CDS//exon       26404942 chr9:35068272-35068273(-) m6A 5'UTR//CDS//exon       26404942

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	VCP	Chromatin K562 cells     - Cytosol K562 cells     - Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus Colon cancer cells     24393600 Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: kshv-miR-K12-5-5p
Interactor2: VCP

Evidence Support:

Prediction-Evidence	miRanda//RNAHybrid
Support Database	VmiReg