Basic Information:

  VIRBase ID:  

VHID00495858

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-5-5p:  MIMAT0015218          HTR1D:  NM_000864     

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Interactor Information:

	Interactor1	Interactor2
Symbol	kshv-miR-K12-5-5p	HTR1D
miRBase Accession/Entrez ID	MIMAT0015218	3352
Organism	Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	5-HT1D//HT1DA//HTR1DA//HTRL//RDC4

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	HTR1D	chr1:23517711(-) A-I      intronic chr1:23518045(-) A-I      intronic chr1:23518187(-) A-I      intronic chr1:23518159(-) A-I      intronic chr1:23518004(-) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	HTR1D	chr1:23518733-23518734(-) m6A 3'UTR       24981863 chr1:23518942-23518943(-) m6A 3'UTR       24981863 chr1:23518949-23518950(-) m6A 3'UTR       24981863 chr1:23518969-23518970(-) m6A 3'UTR       24981863 chr1:23519379-23519380(-) m6A 3'UTR       24981863 chr1:23519493-23519494(-) m6A 3'UTR       24981863 chr1:23519669-23519670(-) m6A CDS       24284625//24209618//24981863 chr1:23519726-23519727(-) m6A CDS       24284625//24209618//24981863//22575960 chr1:23520035-23520036(-) m6A CDS       24981863 chr1:23520140-23520141(-) m6A CDS       24284625//24209618//24981863 chr1:23520152-23520153(-) m6A CDS       24284625//24209618//24981863 chr1:23520308-23520309(-) m6A CDS       24284625//24209618//25456834//24981863//22575960 chr1:23520398-23520399(-) m6A CDS       24284625//24209618//25456834//24981863//22575960 chr1:23520615-23520616(-) m6A CDS       24284625//25456834//24981863 chr1:23520639-23520640(-) m6A CDS       24284625//25456834//24981863//22575960 chr1:23520698-23520699(-) m6A CDS       24284625//25456834//24981863//22575960 chr1:23520771-23520772(-) m6A 5'UTR       24284625//25456834//24981863//22575960 chr1:23520849-23520850(-) m6A 5'UTR       24284625//25456834//24981863//22575960 chr1:23520979-23520980(-) m6A 5'UTR       24981863 chr1:23521009-23521010(-) m6A 5'UTR       24981863 chr1:23521017-23521018(-) m6A 5'UTR       24981863//22575960 chr1:23521167-23521168(-) m6A 5'UTR       24981863//22575960

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	HTR1D	Exosome Blood     -

Interaction Network (The top 100 interactions):

Interactor1: kshv-miR-K12-5-5p
Interactor2: HTR1D

Evidence Support:

Prediction-Evidence	miRanda//PITA//RNAHybrid//Targetscan
Support Database	VmiReg