Basic Information:

  VIRBase ID:  

VHID00495783

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-5-5p:  MIMAT0015218          EXTL1:  NM_004455     

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Interactor Information:

	Interactor1	Interactor2
Symbol	kshv-miR-K12-5-5p	EXTL1
miRBase Accession/Entrez ID	MIMAT0015218	2134
Organism	Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	EXTL

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	EXTL1	chr1:26353047(+) A-I      intronic chr1:26352685(+) A-I      intronic chr1:26354098(+) A-I      intronic chr1:26352810(+) A-I      intronic chr1:26352695(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	EXTL1	chr1:26348718-26348719(+) m6A 5'UTR//intron       25456834 chr1:26348775-26348776(+) m6A 5'UTR//intron       25456834 chr1:26348794-26348795(+) m6A 5'UTR//intron       25456834 chr1:26349033-26349034(+) m6A 5'UTR//intron       25456834 chr1:26349247-26349248(+) m6A CDS//intron       27773536 chr1:26349563-26349564(+) m6A CDS//intron       25456834 chr1:26349597-26349598(+) m6A CDS//intron       25456834 chr1:26349609-26349610(+) m6A CDS//intron       25456834 chr1:26349650-26349651(+) m6A CDS//intron       25456834 chr1:26349664-26349665(+) m6A CDS//intron       25456834 chr1:26349699-26349700(+) m6A CDS//exon//intron       25456834 chr1:26362740-26362741(+) m6A 3'UTR       25456834 chr1:26362772-26362773(+) m6A 3'UTR       25456834 chr1:26362787-26362788(+) m6A 3'UTR       25456834 chr1:26362819-26362820(+) m6A 3'UTR       25456834 chr1:26362860-26362861(+) m6A 3'UTR       25456834

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	EXTL1	Chromatin K562 cells     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)     -

Interaction Network (The top 100 interactions):

Interactor1: kshv-miR-K12-5-5p
Interactor2: EXTL1

Evidence Support:

Prediction-Evidence	miRanda//PITA//RNAHybrid//Targetscan
Support Database	VmiReg