Detail Information

Basic Information:


  VIRBase ID:  

VHID00495638

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-5-5p:           ALAD:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol kshv-miR-K12-5-5p ALAD
miRBase
Accession/Entrez ID		 MIMAT0015218 210
Organism Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV) Homo sapiens
Category miRNA mRNA
Alias - ALADH//PBGS

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR ALAD
chr9:116156415(-) A-I      intronic
chr9:116156683(-) A-I      intronic
chr9:116156394(-) A-I      intronic
chr9:116156493(-) A-I      intronic
chr9:116156357(-) A-I      intronic
chr9:116156316(-) A-I      intronic
chr9:116156686(-) A-I      intronic
chr9:116160026(-) A-I      intronic
chr9:116153711(-) A-I      intronic
chr9:116156395(-) A-I      intronic
chr9:116162940(-) A-I      intronic
chr9:116160002(-) A-I      intronic
chr9:116156652(-) A-I      intronic
chr9:116162846(-) A-I      intronic
chr9:116160043(-) A-I      intronic
chr9:116156279(-) A-I      intronic
chr9:116158592(-) A-I      intronic
chr9:116156756(-) A-I      intronic
chr9:116162906(-) A-I      intronic
chr9:116162858(-) A-I      intronic
chr9:116156626(-) A-I      intronic
chr9:116156561(-) A-I      intronic
chr9:116156680(-) A-I      intronic
chr9:116160098(-) A-I      intronic
chr9:116156324(-) A-I      intronic
chr9:116159997(-) A-I      intronic
chr9:116158354(-) A-I      intronic
chr9:116156755(-) A-I      intronic
chr9:116158638(-) A-I      intronic
chr9:116156416(-) A-I      intronic
chr9:116156515(-) A-I      intronic
chr9:116156436(-) A-I      intronic
chr9:116156401(-) A-I      intronic
chr9:116156600(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED ALAD
chr9:116156394(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase ALAD
chr9:116148664-116148665(-) m6A 3'UTR//exon       27773535
chr9:116148692-116148693(-) m6A 3'UTR//exon       27773535
chr9:116148703-116148704(-) m6A 3'UTR//exon       27773535
chr9:116148732-116148733(-) m6A 3'UTR//exon       27773535
chr9:116148815-116148816(-) m6A 3'UTR//exon       27773535
chr9:116148854-116148855(-) m6A 3'UTR//exon       27773535
chr9:116148954-116148955(-) m6A 3'UTR//exon       24981863//27773535
chr9:116148974-116148975(-) m6A 3'UTR//exon       24981863//27773535
chr9:116148986-116148987(-) m6A 3'UTR//exon       27773535
chr9:116148997-116148998(-) m6A 3'UTR//exon       27773535
chr9:116149073-116149074(-) m6A 3'UTR//exon       24981863
chr9:116149085-116149086(-) m6A 3'UTR//exon       24981863//27773535
chr9:116149120-116149121(-) m6A 3'UTR//exon       24209618//24981863//27773535
chr9:116149253-116149254(-) m6A 3'UTR//exon       24981863//27773535
chr9:116149265-116149266(-) m6A 3'UTR//exon       24981863//27773535
chr9:116149385-116149386(-) m6A 3'UTR//exon       24209618//24981863//27773535//27371828
chr9:116149390-116149391(-) m6A 3'UTR//exon       24209618//24981863//27773535//27371828
chr9:116149400-116149401(-) m6A 3'UTR//exon       24209618//24981863//27773535//27371828
chr9:116149415-116149416(-) m6A 3'UTR//exon       24209618//27773535//27371828
chr9:116149530-116149531(-) m6A 3'UTR//exon       24209618//24981863//27773535//27371828
chr9:116149557-116149558(-) m6A 3'UTR//exon       24209618//24981863//27773535//27371828
chr9:116149575-116149576(-) m6A 3'UTR//exon       24209618//24981863//27773535//27371828
chr9:116149616-116149617(-) m6A 3'UTR//exon       24981863//27773535//27371828
chr9:116149664-116149665(-) m6A 3'UTR//exon       24981863//27773535//27371828
chr9:116149686-116149687(-) m6A 3'UTR//exon       24981863//27773535//27371828
chr9:116149715-116149716(-) m6A 3'UTR//exon       27773535
chr9:116149776-116149777(-) m6A 3'UTR//exon       27773535
chr9:116149791-116149792(-) m6A 3'UTR//exon       27773535
chr9:116149842-116149843(-) m6A 3'UTR//exon       27773535
chr9:116149923-116149924(-) m6A 3'UTR//exon       27773535
chr9:116149974-116149975(-) m6A 3'UTR//exon       27773535
chr9:116150026-116150027(-) m6A 3'UTR//exon       27773535
chr9:116150033-116150034(-) m6A 3'UTR//exon       27773535
chr9:116150489-116150490(-) m6A 3'UTR//exon       24284625//24981863//27773535
chr9:116150513-116150514(-) m6A 3'UTR//exon       24284625//24981863//27773535
chr9:116150523-116150524(-) m6A 3'UTR//exon       24284625//24981863//27773535
chr9:116150549-116150550(-) m6A 3'UTR//exon       24284625//24981863//27773535
chr9:116150555-116150556(-) m6A 3'UTR//exon       24284625//24981863//27773535
chr9:116150573-116150574(-) m6A 3'UTR//exon       24284625//24981863//27773535
chr9:116154584-116154585(-) m6A exon//intron       27773535
chr9:116155778-116155779(-) m6A CDS//exon       24284625//24981863//27773535//27371828//27773536
chr9:116158554-116158555(-) m6A 5'UTR//intron       24284625//25456834//27371828//27773536
chr9:116158711-116158712(-) m6A 5'UTR//intron       27773535
chr9:116158729-116158730(-) m6A 5'UTR//intron       27773535
chr9:116158816-116158817(-) m6A 5'UTR//intron       27773535

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate ALAD
Cytosol HCC cell line (HepG2)     -
Exosome Blood     -
Nucleolus K562 cells     -
Nucleus HCC cell line (HepG2)|HeLa-S3 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: kshv-miR-K12-5-5p
Interactor2: ALAD

Evidence Support:


Prediction-Evidence miRanda//RNAHybrid
Support Database VmiReg

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