Basic Information:

  VIRBase ID:  

VHID00495457

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-7-5p:  MIMAT0015217          PGAM5:  NM_001170544     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	kshv-miR-K12-7-5p	PGAM5
miRBase Accession/Entrez ID	MIMAT0015217	192111
Organism	Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	BXLBV68

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	PGAM5	chr12:133292281(+) A-I      intronic chr12:133292287(+) A-I      intronic chr12:133289698(+) A-I      intronic chr12:133292318(+) A-I      intronic chr12:133297975(+) A-I      3'UTR chr12:133292288(+) A-I      intronic chr12:133292931(+) A-I      intronic chr12:133292936(+) A-I      intronic chr12:133292289(+) A-I      intronic chr12:133292797(+) A-I      intronic chr12:133289107(+) A-I      intronic chr12:133289099(+) A-I      intronic chr12:133292776(+) A-I      intronic chr12:133292772(+) A-I      intronic chr12:133292752(+) A-I      intronic chr12:133292440(+) A-I      intronic chr12:133292358(+) A-I      intronic chr12:133292304(+) A-I      intronic chr12:133288306(+) A-I      intronic chr12:133291979(+) A-I      intronic chr12:133289760(+) A-I      intronic chr12:133288297(+) A-I      intronic chr12:133289736(+) A-I      intronic chr12:133289671(+) A-I      intronic chr12:133289635(+) A-I      intronic chr12:133289143(+) A-I      intronic chr12:133289599(+) A-I      intronic chr12:133293077(+) A-I      intronic chr12:133289560(+) A-I      intronic chr12:133289558(+) A-I      intronic chr12:133289204(+) A-I      intronic chr12:133289524(+) A-I      intronic chr12:133289184(+) A-I      intronic chr12:133293083(+) A-I      intronic chr12:133289172(+) A-I      intronic chr12:133289503(+) A-I      intronic chr12:133293019(+) A-I      intronic chr12:133289488(+) A-I      intronic chr12:133293017(+) A-I      intronic chr12:133289482(+) A-I      intronic chr12:133289316(+) A-I      intronic chr12:133289147(+) A-I      intronic chr12:133289146(+) A-I      intronic chr12:133289242(+) A-I      intronic chr12:133293014(+) A-I      intronic chr12:133289225(+) A-I      intronic chr12:133292967(+) A-I      intronic chr12:133292945(+) A-I      intronic chr12:133292933(+) A-I      intronic chr12:133292932(+) A-I      intronic chr12:133292878(+) A-I      intronic chr12:133292870(+) A-I      intronic chr12:133298095(+) A-I      3'UTR chr12:133298464(+) A-I      3'UTR chr12:133297995(+) A-I      3'UTR chr12:133298962(+) A-I      3'UTR chr12:133298463(+) A-I      3'UTR chr12:133298022(+) A-I      3'UTR chr12:133298254(+) A-I      3'UTR chr12:133298954(+) A-I      3'UTR chr12:133298978(+) A-I      3'UTR chr12:133298279(+) A-I      3'UTR chr12:133298451(+) A-I      3'UTR chr12:133298121(+) A-I      3'UTR chr12:133298145(+) A-I      3'UTR chr12:133298355(+) A-I      3'UTR chr12:133298340(+) A-I      3'UTR chr12:133298331(+) A-I      3'UTR chr12:133298023(+) A-I      3'UTR chr12:133298449(+) A-I      3'UTR chr12:133298418(+) A-I      3'UTR chr12:133298938(+) A-I      3'UTR chr12:133288105(+) A-I      5'UTR chr12:133288110(+) A-I      5'UTR chr12:133298966(+) A-I      3'UTR chr12:133288118(+) A-I      5'UTR chr12:133298315(+) A-I      3'UTR chr12:133288257(+) A-I      5'UTR chr12:133298003(+) A-I      3'UTR chr12:133298303(+) A-I      3'UTR chr12:133298292(+) A-I      3'UTR chr12:133297914(+) A-I      3'UTR chr12:133297930(+) A-I      3'UTR chr12:133298411(+) A-I      3'UTR chr12:133298205(+) A-I      3'UTR chr12:133298194(+) A-I      3'UTR chr12:133298410(+) A-I      3'UTR chr12:133298027(+) A-I      3'UTR chr12:133298428(+) A-I      3'UTR chr12:133298057(+) A-I      3'UTR chr12:133298132(+) A-I      3'UTR chr12:133297942(+) A-I      3'UTR chr12:133298082(+) A-I      3'UTR chr12:133297902(+) A-I      3'UTR chr12:133298856(+) A-I      3'UTR chr12:133298417(+) A-I      3'UTR chr12:133299003(+) A-I      3'UTR chr12:133298016(+) A-I      3'UTR chr12:133298275(+) A-I      3'UTR chr12:133299019(+) A-I      3'UTR chr12:133298025(+) A-I      3'UTR chr12:133298021(+) A-I      3'UTR chr12:133298255(+) A-I      3'UTR chr12:133289625(+) A-I      intronic chr12:133297961(+) A-I      3'UTR chr12:133298917(+) A-I      3'UTR chr12:133299002(+) A-I      3'UTR chr12:133298069(+) A-I      3'UTR chr12:133299010(+) A-I      3'UTR chr12:133298349(+) A-I      3'UTR chr12:133298125(+) A-I      3'UTR chr12:133298053(+) A-I      3'UTR chr12:133298465(+) A-I      3'UTR chr12:133297974(+) A-I      3'UTR chr12:133298019(+) A-I      3'UTR chr12:133297956(+) A-I      3'UTR chr12:133299016(+) A-I      3'UTR chr12:133297904(+) A-I      3'UTR chr12:133298108(+) A-I      3'UTR chr12:133298937(+) A-I      3'UTR chr12:133298059(+) A-I      3'UTR chr12:133298034(+) A-I      3'UTR chr12:133298020(+) A-I      3'UTR chr12:133298339(+) A-I      3'UTR chr12:133297934(+) A-I      3'UTR chr12:133298423(+) A-I      3'UTR chr12:133298359(+) A-I      3'UTR

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	PGAM5	chr12:133289625(+) A-I intron -    22327324 chr12:133297904(+) A-I intron -    22327324 chr12:133297956(+) A-I intron -    22327324 chr12:133297974(+) A-I intron -    22327324 chr12:133298019(+) A-I intron -    22327324 chr12:133298095(+) A-I intron -    22327324 chr12:133298339(+) A-I intron -    21960545   //22327324 chr12:133298349(+) A-I intron -    22327324 chr12:133298417(+) A-I intron -    21960545   //22327324 chr12:133297966(+) A-I intron -    21960545 chr12:133298095(+) A-G intron -    21725310 chr12:133299058(+) A-G intron -    21725310

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	PGAM5	chr12:133287637-133287638(+) m6A CDS       24209618 chr12:133287649-133287650(+) m6A CDS       24209618 chr12:133287728-133287729(+) m6A 5'UTR//intron       24209618 chr12:133291390-133291391(+) m6A 5'UTR//intron       24209618 chr12:133291396-133291397(+) m6A 5'UTR//intron       24209618 chr12:133291404-133291405(+) m6A 5'UTR//intron       24209618 chr12:133291419-133291420(+) m6A 5'UTR//intron       24209618 chr12:133291449-133291450(+) m6A 5'UTR//CDS       24209618//24981863//27773535 chr12:133291499-133291500(+) m1A 5'UTR//CDS       26863196 chr12:133291520-133291521(+) m6A 5'UTR//CDS       24209618 chr12:133294119-133294120(+) m6A CDS       24284625//22575960 chr12:133294349-133294350(+) m6A CDS       24284625//22575960 chr12:133294615-133294616(+) m6A CDS       24284625//22575960 chr12:133294651-133294652(+) m6A CDS       24284625 chr12:133295748-133295749(+) m6A 3'UTR//intron       24284625//24209618//24981863//22575960 chr12:133297363-133297364(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr12:133297373-133297374(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr12:133297486-133297487(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr12:133297503-133297504(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr12:133297525-133297526(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr12:133297567-133297568(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr12:133297607-133297608(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr12:133297672-133297673(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr12:133297694-133297695(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr12:133297783-133297784(+) Tm 3'UTR       - chr12:133297852-133297853(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085 chr12:133298529-133298530(+) m6A 3'UTR       - chr12:133298575-133298576(+) m6A 3'UTR       - chr12:133298611-133298612(+) m6A 3'UTR       -

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	PGAM5	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Cytosol K562 cells     - Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: kshv-miR-K12-7-5p
Interactor2: PGAM5

Evidence Support:

Prediction-Evidence	miRanda//RNAHybrid//Targetscan
Support Database	VmiReg