Detail Information

Basic Information:


  VIRBase ID:  

VHID00494618

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-7-5p:           PTCH2:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol kshv-miR-K12-7-5p PTCH2
miRBase
Accession/Entrez ID		 MIMAT0015217 8643
Organism Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV) Homo sapiens
Category miRNA mRNA
Alias - PTC2

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR PTCH2
chr1:45306759(-) A-I      intronic
chr1:45289381(-) A-I      intronic
chr1:45289400(-) A-I      intronic
chr1:45304569(-) A-I      intronic
chr1:45299440(-) A-I      intronic
chr1:45299439(-) A-I      intronic
chr1:45306760(-) A-I      intronic
chr1:45304561(-) A-I      intronic
chr1:45303119(-) A-I      intronic
chr1:45300905(-) A-I      intronic
chr1:45290925(-) A-I      intronic
chr1:45303095(-) A-I      intronic
chr1:45303074(-) A-I      intronic
chr1:45303058(-) A-I      intronic
chr1:45290866(-) A-I      intronic
chr1:45302208(-) A-I      intronic
chr1:45299433(-) A-I      intronic
chr1:45289511(-) A-I      intronic
chr1:45289596(-) A-I      intronic
chr1:45290272(-) A-I      intronic
chr1:45290298(-) A-I      intronic
chr1:45299589(-) A-I      intronic
chr1:45290308(-) A-I      intronic
chr1:45290402(-) A-I      intronic
chr1:45290418(-) A-I      intronic
chr1:45289419(-) A-I      intronic
chr1:45290469(-) A-I      intronic
chr1:45290639(-) A-I      intronic
chr1:45290931(-) A-I      intronic
chr1:45290938(-) A-I      intronic
chr1:45289502(-) A-I      intronic
chr1:45299868(-) A-I      intronic
chr1:45299940(-) A-I      intronic
chr1:45299952(-) A-I      intronic
chr1:45299956(-) A-I      intronic
chr1:45299968(-) A-I      intronic
chr1:45300795(-) A-I      intronic
chr1:45300803(-) A-I      intronic
chr1:45300979(-) A-I      intronic
chr1:45302137(-) A-I      intronic
chr1:45302177(-) A-I      intronic
chr1:45302574(-) A-I      intronic
chr1:45302578(-) A-I      intronic
chr1:45302582(-) A-I      intronic
chr1:45290956(-) A-I      intronic
chr1:45289487(-) A-I      intronic
chr1:45291037(-) A-I      intronic
chr1:45291310(-) A-I      intronic
chr1:45291426(-) A-I      intronic
chr1:45291445(-) A-I      intronic
chr1:45291548(-) A-I      intronic
chr1:45291735(-) A-I      intronic
chr1:45299201(-) A-I      intronic
chr1:45299224(-) A-I      intronic
chr1:45299269(-) A-I      intronic
chr1:45299406(-) A-I      intronic
chr1:45289441(-) A-I      intronic
chr1:45289443(-) A-I      intronic
chr1:45289481(-) A-I      intronic
chr1:45289489(-) A-I      intronic
chr1:45304515(-) A-I      intronic
chr1:45304484(-) A-I      intronic
chr1:45304972(-) A-I      intronic
chr1:45304477(-) A-I      intronic
chr1:45304460(-) A-I      intronic
chr1:45304185(-) A-I      intronic
chr1:45304137(-) A-I      intronic
chr1:45290430(-) A-I      intronic
chr1:45304025(-) A-I      intronic
chr1:45304011(-) A-I      intronic
chr1:45304010(-) A-I      intronic
chr1:45303697(-) A-I      intronic
chr1:45303692(-) A-I      intronic
chr1:45303685(-) A-I      intronic
chr1:45303645(-) A-I      intronic
chr1:45303561(-) A-I      intronic
chr1:45303121(-) A-I      intronic
chr1:45308155(-) A-I      intronic
chr1:45306779(-) A-I      intronic
chr1:45306703(-) A-I      intronic
chr1:45306636(-) A-I      intronic
chr1:45306624(-) A-I      intronic
chr1:45306217(-) A-I      intronic
chr1:45306210(-) A-I      intronic
chr1:45305994(-) A-I      intronic
chr1:45305974(-) A-I      intronic
chr1:45305880(-) A-I      intronic
chr1:45304992(-) A-I      intronic
chr1:45304971(-) A-I      intronic
chr1:45304888(-) A-I      intronic
chr1:45304862(-) A-I      intronic
chr1:45304530(-) A-I      intronic
chr1:45304520(-) A-I      intronic
chr1:45306045(-) A-I      intronic
chr1:45306234(-) A-I      intronic
chr1:45304882(-) A-I      intronic
chr1:45304580(-) A-I      intronic
chr1:45306371(-) A-I      intronic
chr1:45289445(-) A-I      intronic
chr1:45303070(-) A-I      intronic
chr1:45303079(-) A-I      intronic
chr1:45304657(-) A-I      intronic
chr1:45303691(-) A-I      intronic
chr1:45300777(-) A-I      intronic
chr1:45300928(-) A-I      intronic
chr1:45303494(-) A-I      intronic
chr1:45304051(-) A-I      intronic
chr1:45302119(-) A-I      intronic
chr1:45308133(-) A-I      intronic
chr1:45306435(-) A-I      intronic
chr1:45300900(-) A-I      intronic
chr1:45299417(-) A-I      intronic
chr1:45302183(-) A-I      intronic
chr1:45306271(-) A-I      intronic
chr1:45299489(-) A-I      intronic
chr1:45304674(-) A-I      intronic
chr1:45300893(-) A-I      intronic
chr1:45304497(-) A-I      intronic
chr1:45299977(-) A-I      intronic
chr1:45299171(-) A-I      intronic
chr1:45300867(-) A-I      intronic
chr1:45290947(-) A-I      intronic
chr1:45302066(-) A-I      intronic
chr1:45300996(-) A-I      intronic
chr1:45300013(-) A-I      intronic
chr1:45299273(-) A-I      intronic
chr1:45304876(-) A-I      intronic
chr1:45302314(-) A-I      intronic
chr1:45303063(-) A-I      intronic
chr1:45306299(-) A-I      intronic
chr1:45291336(-) A-I      intronic
chr1:45308193(-) A-I      intronic
chr1:45304825(-) A-I      intronic
chr1:45304988(-) A-I      intronic
chr1:45303129(-) A-I      intronic
chr1:45302445(-) A-I      intronic
chr1:45303345(-) A-I      intronic
chr1:45304074(-) A-I      intronic
chr1:45300885(-) A-I      intronic
chr1:45304139(-) A-I      intronic
chr1:45303702(-) A-I      intronic
chr1:45300902(-) A-I      intronic
chr1:45302231(-) A-I      intronic
chr1:45305582(-) A-I      intronic
chr1:45291277(-) A-I      intronic
chr1:45299569(-) A-I      intronic
chr1:45307964(-) A-I      intronic
chr1:45290526(-) A-I      intronic
chr1:45305954(-) A-I      intronic
chr1:45303054(-) A-I      intronic
chr1:45291697(-) A-I      intronic
chr1:45289499(-) A-I      intronic
chr1:45296175(-) A-I      intronic
chr1:45306490(-) A-I      intronic
chr1:45306483(-) A-I      intronic
chr1:45300877(-) A-I      intronic
chr1:45289607(-) A-I      intronic
chr1:45306497(-) A-I      intronic
chr1:45290232(-) A-I      intronic
chr1:45300899(-) A-I      intronic
chr1:45291804(-) A-I      intronic
chr1:45306614(-) A-I      intronic
chr1:45302577(-) A-I      intronic
chr1:45299974(-) A-I      intronic
chr1:45290538(-) A-I      intronic
chr1:45299407(-) A-I      intronic
chr1:45304459(-) A-I      intronic
chr1:45304879(-) A-I      intronic
chr1:45289503(-) A-I      intronic
chr1:45303642(-) A-I      intronic
chr1:45289569(-) A-I      intronic
chr1:45304556(-) A-I      intronic
chr1:45300966(-) A-I      intronic
chr1:45304449(-) A-I      intronic
chr1:45306235(-) A-I      intronic
chr1:45304114(-) A-I      intronic
chr1:45300904(-) A-I      intronic
chr1:45302610(-) A-I      intronic
chr1:45306126(-) A-I      intronic
chr1:45289541(-) A-I      intronic
chr1:45291655(-) A-I      intronic
chr1:45306275(-) A-I      intronic
chr1:45300875(-) A-I      intronic
chr1:45304804(-) A-I      intronic
chr1:45303158(-) A-I      intronic
chr1:45289394(-) A-I      intronic
chr1:45302212(-) A-I      intronic
chr1:45306627(-) A-I      intronic
chr1:45305843(-) A-I      intronic
chr1:45306220(-) A-I      intronic
chr1:45304935(-) A-I      intronic
chr1:45302079(-) A-I      intronic
chr1:45290912(-) A-I      intronic
chr1:45304551(-) A-I      intronic
chr1:45308215(-) A-I      intronic
chr1:45308129(-) A-I      intronic
chr1:45290921(-) A-I      intronic
chr1:45308116(-) A-I      intronic
chr1:45306778(-) A-I      intronic
chr1:45306261(-) A-I      intronic
chr1:45305903(-) A-I      intronic
chr1:45306721(-) A-I      intronic
chr1:45299923(-) A-I      intronic
chr1:45299187(-) A-I      intronic
chr1:45306781(-) A-I      intronic
chr1:45303295(-) A-I      intronic
chr1:45305871(-) A-I      intronic
chr1:45290227(-) A-I      intronic
chr1:45291430(-) A-I      intronic
chr1:45289516(-) A-I      intronic
chr1:45303064(-) A-I      intronic
chr1:45302232(-) A-I      intronic
chr1:45302373(-) A-I      intronic
chr1:45302277(-) A-I      intronic
chr1:45303122(-) A-I      intronic
chr1:45306466(-) A-I      intronic
chr1:45300839(-) A-I      intronic
chr1:45290176(-) A-I      intronic
chr1:45302213(-) A-I      intronic
chr1:45303999(-) A-I      intronic
chr1:45290595(-) A-I      intronic
chr1:45306454(-) A-I      intronic
chr1:45300942(-) A-I      intronic
chr1:45308126(-) A-I      intronic
chr1:45291423(-) A-I      intronic
chr1:45290294(-) A-I      intronic
chr1:45306356(-) A-I      intronic
chr1:45289606(-) A-I      intronic
chr1:45303716(-) A-I      intronic
chr1:45306200(-) A-I      intronic
chr1:45289563(-) A-I      intronic
chr1:45304987(-) A-I      intronic
chr1:45304873(-) A-I      intronic
chr1:45304552(-) A-I      intronic
chr1:45306711(-) A-I      intronic
chr1:45306153(-) A-I      intronic
chr1:45302217(-) A-I      intronic
chr1:45302200(-) A-I      intronic
chr1:45302371(-) A-I      intronic
chr1:45291711(-) A-I      intronic
chr1:45302369(-) A-I      intronic
chr1:45303367(-) A-I      intronic
chr1:45306044(-) A-I      intronic
chr1:45303344(-) A-I      intronic
chr1:45302502(-) A-I      intronic
chr1:45289604(-) A-I      intronic
chr1:45299929(-) A-I      intronic
chr1:45302413(-) A-I      intronic
chr1:45289407(-) A-I      intronic
chr1:45299946(-) A-I      intronic
chr1:45308083(-) A-I      intronic
chr1:45289547(-) A-I      intronic
chr1:45289439(-) A-I      intronic
chr1:45291677(-) A-I      intronic
chr1:45291337(-) A-I      intronic
chr1:45305872(-) A-I      intronic
chr1:45291654(-) A-I      intronic
chr1:45302512(-) A-I      intronic
chr1:45304803(-) A-I      intronic
chr1:45304095(-) A-I      intronic
chr1:45300930(-) A-I      intronic
chr1:45302548(-) A-I      intronic
chr1:45302294(-) A-I      intronic
chr1:45302187(-) A-I      intronic
chr1:45303023(-) A-I      intronic
chr1:45289406(-) A-I      intronic
chr1:45305864(-) A-I      intronic
chr1:45308090(-) A-I      intronic
chr1:45302431(-) A-I      intronic
chr1:45305895(-) A-I      intronic
chr1:45302255(-) A-I      intronic
chr1:45303632(-) A-I      intronic
chr1:45291628(-) A-I      intronic
chr1:45300008(-) A-I      intronic
chr1:45302992(-) A-I      intronic
chr1:45303130(-) A-I      intronic
chr1:45300074(-) A-I      intronic
chr1:45308130(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED PTCH2
chr1:45302502(-) A-G intron -    22484847
chr1:45302512(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase PTCH2
chr1:45285616-45285617(-) Y 3'UTR       26075521
chr1:45285623-45285624(-) Y 3'UTR       16381836
chr1:45285626-45285627(-) Y 3'UTR       16381836
chr1:45285628-45285629(-) Tm 3'UTR       -
chr1:45285629-45285630(-) Um 3'UTR       16381836
chr1:45285632-45285633(-) Gm 3'UTR       16381836

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate PTCH2
Chromatin K562 cells     -
Exosome Blood     -
Nucleoplasm K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: kshv-miR-K12-7-5p
Interactor2: PTCH2

Evidence Support:


Prediction-Evidence miRanda//PITA//RNAHybrid//Targetscan
Support Database VmiReg

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