Basic Information:

  VIRBase ID:  

VHID00494309

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-7-5p:  MIMAT0015217          DVL1:  NM_001330311     

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Interactor Information:

	Interactor1	Interactor2
Symbol	kshv-miR-K12-7-5p	DVL1
miRBase Accession/Entrez ID	MIMAT0015217	1855
Organism	Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	DRS2//DVL//DVL1L1//DVL1P1

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	DVL1	chr1:1270657-1270658(-) m6A 3'UTR       27773535 chr1:1270684-1270685(-) m6A 3'UTR       27773535 chr1:1270921-1270922(-) m6A 3'UTR       24284625//25456834//24981863//27773535//27371828//27773536 chr1:1270959-1270960(-) m6A 3'UTR       24284625//25456834//24981863//27773535//27371828//27773536//22575960 chr1:1270982-1270983(-) m6A 3'UTR       24284625//25456834//24981863//27773535//27371828//27773536//22575960 chr1:1271241-1271242(-) m6A 3'UTR       24284625//27773536 chr1:1271290-1271291(-) m6A 3'UTR       24284625//25456834//27773536//22575960 chr1:1271399-1271400(-) m6A 3'UTR       24284625//25456834//24981863//27371828//27773536//22575960//22608085 chr1:1271531-1271532(-) m6A CDS       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085 chr1:1271552-1271553(-) m6A CDS       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085 chr1:1271629-1271630(-) m6A CDS       24284625//24209618//25456834//24981863//27371828//27773536//22575960 chr1:1272407-1272408(-) m6A 3'UTR//intron       - chr1:1272420-1272421(-) m6A 3'UTR//intron       - chr1:1272428-1272429(-) m6A CDS//intron       - chr1:1273406-1273407(-) m6A CDS       24284625//27773535//27371828//27773536 chr1:1273438-1273439(-) m6A CDS       24284625//27773535 chr1:1273511-1273512(-) m6A CDS       24284625 chr1:1273524-1273525(-) m6A CDS       24284625//27773536 chr1:1273547-1273548(-) m6A CDS       24284625//27773536 chr1:1273800-1273801(-) m6A CDS//exon//intron       24284625//27773536//22575960 chr1:1273956-1273957(-) m6A CDS//exon//intron       24284625//27773536//22575960 chr1:1273963-1273964(-) m6A CDS//exon//intron       24284625//27773536//22575960 chr1:1275169-1275170(-) m6A CDS//exon//intron       22575960 chr1:1275178-1275179(-) m6A CDS//exon//intron       22575960 chr1:1275552-1275553(-) m6A CDS//exon//intron       24284625//22575960 chr1:1275793-1275794(-) m6A CDS//intron       24284625//27773536 chr1:1275846-1275847(-) m6A CDS       24284625//24209618//27371828//27773536 chr1:1277073-1277074(-) m6A CDS       24284625//24209618//27371828//27773536 chr1:1277124-1277125(-) m6A CDS       24284625//24209618//27371828//27773536 chr1:1277154-1277155(-) m6A CDS//exon       24284625//24209618//27371828//27773536 chr1:1277176-1277177(-) m6A CDS//exon       24284625//24209618//27371828//27773536 chr1:1277220-1277221(-) m6A exon//intron       24284625//24209618//27371828//27773536 chr1:1277238-1277239(-) m6A exon//intron       24284625//24209618//27371828//27773536 chr1:1277274-1277275(-) m6A exon//intron       24284625//24209618//27371828//27773536 chr1:1277384-1277385(-) m6A exon//intron       24209618//27773536 chr1:1277402-1277403(-) m6A exon//intron       24209618//27773536 chr1:1277443-1277444(-) m6A CDS//exon       24284625//24209618//27371828//27773536//22575960 chr1:1277495-1277496(-) m6A CDS//exon       24284625//24209618//27371828//27773536//22575960 chr1:1277503-1277504(-) m6A CDS//exon       24284625//24209618//27371828//27773536//22575960 chr1:1277763-1277764(-) m6A CDS//exon       24284625//24209618//27371828//27773536//22575960 chr1:1277779-1277780(-) m6A CDS//exon       24284625//24209618//27371828//27773536//22575960 chr1:1277802-1277803(-) m6A CDS//exon       24284625//24209618//27371828//27773536//22575960 chr1:1277814-1277815(-) m6A CDS//exon       24284625//24209618//27371828//27773536//22575960 chr1:1284281-1284282(-) m6A CDS//exon       24284625//24209618//27773536//22575960 chr1:1284287-1284288(-) m6A CDS//exon       24284625//24209618//27773536//22575960 chr1:1284435-1284436(-) m6A CDS       24209618//24981863//27371828//27773536

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	DVL1	Chromatin K562 cells     - Cytosol K562 cells     - Exosome Blood     - Insoluble cytoplasm HCC cell line (HepG2)     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HeLa-S3 cells|K562 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: kshv-miR-K12-7-5p
Interactor2: DVL1

Evidence Support:

Prediction-Evidence	miRanda//PITA//RNAHybrid//Targetscan
Support Database	VmiReg