Detail Information

Basic Information:


  VIRBase ID:  

VHID00493729

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-8-5p:           PAQR7:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol kshv-miR-K12-8-5p PAQR7
miRBase
Accession/Entrez ID		 MIMAT0015216 164091
Organism Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV) Homo sapiens
Category miRNA mRNA
Alias - MPRA//mSR//PGLP

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR PAQR7
chr1:26193563(-) A-I      intronic
chr1:26188375(-) A-I      3'UTR
chr1:26188398(-) A-I      3'UTR
chr1:26188383(-) A-I      3'UTR
chr1:26193435(-) A-I      intronic
chr1:26193589(-) A-I      intronic
chr1:26188385(-) A-I      3'UTR
chr1:26188395(-) A-I      3'UTR
chr1:26192391(-) A-I      intronic
chr1:26195604(-) A-I      intronic
chr1:26195390(-) A-I      intronic
chr1:26195196(-) A-I      intronic
chr1:26195195(-) A-I      intronic
chr1:26194957(-) A-I      intronic
chr1:26194955(-) A-I      intronic
chr1:26194941(-) A-I      intronic
chr1:26193807(-) A-I      intronic
chr1:26193798(-) A-I      intronic
chr1:26193577(-) A-I      intronic
chr1:26193438(-) A-I      intronic
chr1:26193368(-) A-I      intronic
chr1:26192394(-) A-I      intronic
chr1:26191931(-) A-I      intronic
chr1:26191291(-) A-I      intronic
chr1:26191259(-) A-I      intronic
chr1:26191233(-) A-I      intronic
chr1:26191218(-) A-I      intronic
chr1:26191164(-) A-I      intronic
chr1:26193291(-) A-I      intronic
chr1:26195986(-) A-I      intronic
chr1:26194943(-) A-I      intronic
chr1:26193659(-) A-I      intronic
chr1:26193489(-) A-I      intronic
chr1:26192136(-) A-I      intronic
chr1:26193488(-) A-I      intronic
chr1:26193754(-) A-I      intronic
chr1:26193653(-) A-I      intronic
chr1:26191127(-) A-I      intronic
chr1:26195490(-) A-I      intronic
chr1:26191382(-) A-I      intronic
chr1:26193579(-) A-I      intronic
chr1:26192438(-) A-I      intronic
chr1:26193468(-) A-I      intronic
chr1:26193503(-) A-I      intronic
chr1:26193388(-) A-I      intronic
chr1:26191403(-) A-I      intronic
chr1:26195125(-) A-I      intronic
chr1:26193666(-) A-I      intronic
chr1:26192414(-) A-I      intronic
chr1:26191324(-) A-I      intronic
chr1:26193707(-) A-I      intronic
chr1:26193665(-) A-I      intronic
chr1:26195089(-) A-I      intronic
chr1:26193628(-) A-I      intronic
chr1:26195506(-) A-I      intronic
chr1:26190579(-) A-I      intronic
chr1:26192377(-) A-I      intronic
chr1:26193547(-) A-I      intronic
chr1:26192111(-) A-I      intronic
chr1:26196027(-) A-I      intronic
chr1:26193296(-) A-I      intronic
chr1:26191177(-) A-I      intronic
chr1:26191284(-) A-I      intronic
chr1:26191525(-) A-I      intronic
chr1:26193495(-) A-I      intronic
chr1:26191131(-) A-I      intronic
chr1:26193362(-) A-I      intronic
chr1:26195034(-) A-I      intronic
chr1:26193671(-) A-I      intronic
chr1:26191128(-) A-I      intronic
chr1:26195007(-) A-I      intronic
chr1:26191300(-) A-I      intronic
chr1:26195951(-) A-I      intronic
chr1:26193759(-) A-I      intronic
chr1:26195496(-) A-I      intronic
chr1:26193614(-) A-I      intronic
chr1:26193320(-) A-I      intronic
chr1:26192926(-) A-I      intronic
chr1:26195577(-) A-I      intronic
chr1:26191220(-) A-I      intronic
chr1:26191749(-) A-I      intronic
chr1:26194995(-) A-I      intronic
chr1:26191458(-) A-I      intronic
chr1:26193522(-) A-I      intronic
chr1:26193361(-) A-I      intronic
chr1:26196049(-) A-I      intronic
chr1:26192390(-) A-I      intronic
chr1:26195061(-) A-I      intronic
chr1:26192368(-) A-I      intronic
chr1:26191413(-) A-I      intronic
chr1:26193394(-) A-I      intronic
chr1:26195806(-) A-I      intronic
chr1:26195101(-) A-I      intronic
chr1:26193643(-) A-I      intronic
chr1:26191202(-) A-I      intronic
chr1:26191214(-) A-I      intronic
chr1:26193254(-) A-I      intronic
chr1:26195376(-) A-I      intronic
chr1:26195518(-) A-I      intronic
chr1:26195092(-) A-I      intronic
chr1:26191230(-) A-I      intronic
chr1:26195375(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED PAQR7
chr1:26191128(-) A-G intron -    22484847
chr1:26193361(-) A-G intron -    22484847
chr1:26193362(-) A-G intron -    22484847
chr1:26193394(-) A-G intron -    22484847
chr1:26193488(-) A-G intron -    22484847
chr1:26193495(-) A-G intron -    22484847
chr1:26193579(-) A-G intron -    22484847
chr1:26195101(-) A-G intron -    22484847
chr1:26195518(-) A-G intron -    22484847
chr1:26195577(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase PAQR7
chr1:26188060-26188061(-) m6A 3'UTR       24981863//27773535
chr1:26188072-26188073(-) m6A 3'UTR       24981863//27773535
chr1:26188151-26188152(-) m6A 3'UTR       24284625//24981863//27773535
chr1:26188197-26188198(-) m6A 3'UTR       24284625//24981863//27773535
chr1:26188940-26188941(-) m6A 3'UTR       -
chr1:26189217-26189218(-) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085
chr1:26189247-26189248(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27371828//22608085
chr1:26189297-26189298(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr1:26189310-26189311(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr1:26189443-26189444(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr1:26189680-26189681(-) m6A CDS       24284625//24209618//24981863//27773535//22608085
chr1:26189739-26189740(-) m6A CDS       24284625//24209618//24981863//27773535//22608085
chr1:26189905-26189906(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr1:26190028-26190029(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr1:26190040-26190041(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr1:26190047-26190048(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr1:26190101-26190102(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr1:26190161-26190162(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr1:26190312-26190313(-) m6A CDS       24284625

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate PAQR7
Cytoplasm Nasopharyngeal carcinoma cells     20498841
Exosome Blood     -
Nucleus Nasopharyngeal carcinoma cells     20498841

Interaction Network (The top 100 interactions):


Interactor1: kshv-miR-K12-8-5p
Interactor2: PAQR7

Evidence Support:


Prediction-Evidence miRanda//PITA//RNAHybrid//Targetscan
Support Database VmiReg

Starting a new search, please wait ...