Basic Information:

  VIRBase ID:  

VHID00493370

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-8-5p:  MIMAT0015216          TMEM183A:  NR_146285     

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Interactor Information:

	Interactor1	Interactor2
Symbol	kshv-miR-K12-8-5p	TMEM183A
miRBase Accession/Entrez ID	MIMAT0015216	92703
Organism	Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	C1orf37

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	TMEM183A	chr1:202977901-202977902(+) m6A CDS//exon       - chr1:202977930-202977931(+) m6A CDS//exon       - chr1:202984020-202984021(+) m6A CDS//exon       - chr1:202986901-202986902(+) m6A exon//intron       - chr1:202993751-202993752(+) m6A 3'UTR       24981863 chr1:202993780-202993781(+) m6A 3'UTR       24981863//22608085 chr1:202993791-202993792(+) m6A 3'UTR       24981863//22608085 chr1:202993878-202993879(+) m6A 3'UTR       22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	TMEM183A	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleus HCC cell line (HepG2)     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: kshv-miR-K12-8-5p
Interactor2: TMEM183A

Evidence Support:

Prediction-Evidence	miRanda//PITA//RNAHybrid//Targetscan
Support Database	VmiReg