Basic Information:

  VIRBase ID:  

VHID00492974

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-8-5p:  MIMAT0015216          CHPF:  NM_001195731     

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Interactor Information:

	Interactor1	Interactor2
Symbol	kshv-miR-K12-8-5p	CHPF
miRBase Accession/Entrez ID	MIMAT0015216	79586
Organism	Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	CHSY2//CSS2

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	CHPF	chr2:220403675-220403676(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535 chr2:220403690-220403691(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535 chr2:220403719-220403720(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535 chr2:220403894-220403895(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960 chr2:220403942-220403943(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960 chr2:220403997-220403998(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960 chr2:220404044-220404045(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085 chr2:220404128-220404129(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085 chr2:220404154-220404155(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085 chr2:220404204-220404205(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085 chr2:220404344-220404345(-) m6A CDS       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085 chr2:220404555-220404556(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085 chr2:220404582-220404583(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085 chr2:220404609-220404610(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085 chr2:220404667-220404668(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085 chr2:220405035-220405036(-) m6A CDS       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085 chr2:220405131-220405132(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085 chr2:220405150-220405151(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085 chr2:220405248-220405249(-) m6A CDS       24284625//24209618//24981863//27371828 chr2:220405323-220405324(-) m6A CDS       24284625//24209618//27773535 chr2:220405703-220405704(-) m6A CDS       24284625//27773535 chr2:220405791-220405792(-) m6A CDS       24284625 chr2:220406231-220406232(-) m6A 3'UTR//intron       24284625//27773535 chr2:220406533-220406534(-) m6A CDS       24284625//25456834//24981863//27371828//27773536//22575960//22608085 chr2:220406700-220406701(-) m6A CDS       24284625//25456834//24981863//27371828//27773536//22575960//22608085 chr2:220406812-220406813(-) m6A 5'UTR//CDS       24284625//24981863//27371828//27773536//22575960 chr2:220406843-220406844(-) m6A 5'UTR//CDS       24284625//27371828//27773536//22575960 chr2:220407717-220407718(-) m6A 5'UTR//intron       24284625//27371828//27773536 chr2:220407729-220407730(-) m6A 5'UTR//intron       27371828//27773536 chr2:220407738-220407739(-) m6A 5'UTR//intron       27371828//27773536 chr2:220407771-220407772(-) m6A 5'UTR//intron       27371828//27773536 chr2:220408120-220408121(-) m6A CDS       24284625//27371828//27773536 chr2:220408277-220408278(-) m6A 5'UTR       27371828//27773536 chr2:220408315-220408316(-) m6A 5'UTR       27371828//27773536 chr2:220408473-220408474(-) m6A 5'UTR       25456834//24981863//27371828//27773536

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	CHPF	Exosome Blood     - Nucleolus K562 cells     - Nucleus HCC cell line (HepG2)|HeLa-S3 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: kshv-miR-K12-8-5p
Interactor2: CHPF

Evidence Support:

Prediction-Evidence	miRanda//RNAHybrid//Targetscan
Support Database	VmiReg