Detail Information

Basic Information:


  VIRBase ID:  

VHID00492709

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-8-5p:           FAM219B:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol kshv-miR-K12-8-5p FAM219B
miRBase
Accession/Entrez ID		 MIMAT0015216 57184
Organism Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV) Homo sapiens
Category miRNA mRNA
Alias - C15orf17

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR FAM219B
chr15:75196687(-) A-I      intronic
chr15:75196665(-) A-I      intronic
chr15:75195676(-) A-I      intronic
chr15:75196761(-) A-I      intronic
chr15:75196743(-) A-I      intronic
chr15:75196769(-) A-I      intronic
chr15:75196668(-) A-I      intronic
chr15:75195685(-) A-I      intronic
chr15:75193599(-) A-I      3'UTR
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED FAM219B
chr15:75193948(-) A-I exon 3'UTR    22327324
chr15:75196769(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase FAM219B
chr15:75193771-75193772(-) m6A 3'UTR//exon//intron       -
chr15:75193812-75193813(-) m6A 3'UTR//exon//intron       -
chr15:75193982-75193983(-) Cm 3'UTR//exon//intron       -
chr15:75194958-75194959(-) m6A 3'UTR//exon       24284625//24981863//22608085
chr15:75194984-75194985(-) m6A 3'UTR//CDS//exon       24284625//24981863//22608085
chr15:75195047-75195048(-) m6A 3'UTR//CDS//exon       24284625//24981863//22608085
chr15:75195053-75195054(-) m6A 3'UTR//CDS//exon       24284625//24981863//22608085
chr15:75195119-75195120(-) m6A 3'UTR//CDS//exon       24284625
chr15:75198633-75198634(-) m6A CDS//exon//intron       27773536
chr15:75198642-75198643(-) m6A CDS//exon//intron       27773536
chr15:75198693-75198694(-) m6A 5'UTR//CDS//exon//intron       27773536
chr15:75198736-75198737(-) m6A 5'UTR//intron       27773536
chr15:75199067-75199068(-) m6A CDS//exon       24981863//27371828//27773536
chr15:75199090-75199091(-) m6A CDS//exon       24981863//27371828//27773536
chr15:75199272-75199273(-) m6A 5'UTR       -
chr15:75199280-75199281(-) m6A 5'UTR       -
chr15:75199301-75199302(-) m6A 5'UTR       24284625
chr15:75199332-75199333(-) m6A 5'UTR       24284625
chr15:75199344-75199345(-) m6A 5'UTR       24284625
chr15:75199386-75199387(-) m6A 5'UTR       24284625
chr15:75199391-75199392(-) m6A 5'UTR       24284625
chr15:75199459-75199460(-) m6A 5'UTR       24284625

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate FAM219B
Cytoplasm Nasopharyngeal carcinoma cells     20498841
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol HCC cell line (HepG2)     -
Exosome Blood     -
Nucleoplasm K562 cells     -
Nucleus Nasopharyngeal carcinoma cells     20498841
Nucleus HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: kshv-miR-K12-8-5p
Interactor2: FAM219B

Evidence Support:


Prediction-Evidence miRanda//Targetscan
Support Database VmiReg

Starting a new search, please wait ...