Basic Information:

  VIRBase ID:  

VHID00491684

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-8-5p:  MIMAT0015216          SIGMAR1:  NR_104108     

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Interactor Information:

	Interactor1	Interactor2
Symbol	kshv-miR-K12-8-5p	SIGMAR1
miRBase Accession/Entrez ID	MIMAT0015216	10280
Organism	Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	ALS16//DSMA2//hSigmaR1//OPRS1//SIG-1R//sigma1R//SR-BP//SR-BP1//SRBP

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	SIGMAR1	chr9:34634890-34634891(-) m6A 3'UTR       27773535 chr9:34634915-34634916(-) m6A 3'UTR       27773535 chr9:34634966-34634967(-) m6A 3'UTR       27773535 chr9:34635269-34635270(-) m6A 3'UTR       24284625//26404942//27773535 chr9:34635344-34635345(-) m6A 3'UTR       24284625//26404942//27773535 chr9:34635409-34635410(-) m6A 3'UTR       24284625//24209618//24981863//26404942//27773535//22608085 chr9:34635427-34635428(-) m6A 3'UTR       24284625//24209618//24981863//26404942//27773535//22608085 chr9:34635445-34635446(-) m6A 3'UTR       24284625//24209618//24981863//26404942//27773535//22575960//22608085 chr9:34635454-34635455(-) m6A 3'UTR       24284625//24209618//24981863//26404942//27773535//22575960//22608085 chr9:34635464-34635465(-) m6A 3'UTR       24284625//24209618//24981863//26404942//27773535//22575960//22608085 chr9:34635472-34635473(-) m6A 3'UTR       24284625//24209618//24981863//26404942//27773535//22575960//22608085 chr9:34635537-34635538(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//22575960//22608085 chr9:34635543-34635544(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//22575960//22608085 chr9:34635595-34635596(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//22575960//22608085 chr9:34635607-34635608(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//22575960//22608085 chr9:34635635-34635636(-) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//22575960//22608085 chr9:34635716-34635717(-) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr9:34635800-34635801(-) m6A 3'UTR//CDS//exon       24284625//24209618//24981863//27773535//22575960 chr9:34636773-34636774(-) m6A exon//intron       24284625//27773535 chr9:34636793-34636794(-) m6A exon//intron       24284625//27773535 chr9:34636798-34636799(-) m6A exon//intron       24284625//27773535 chr9:34636825-34636826(-) m6A exon//intron       24284625//27773535 chr9:34637193-34637194(-) m6A exon//intron       24284625//22575960 chr9:34637410-34637411(-) m6A 5'UTR//CDS//exon       24284625//27773536//22575960 chr9:34637459-34637460(-) m6A 5'UTR//exon//intron       24284625//27773536 chr9:34637466-34637467(-) m6A 5'UTR//exon//intron       24284625//27773536

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	SIGMAR1	Cytosol HCC cell line (HepG2)     - Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: kshv-miR-K12-8-5p
Interactor2: SIGMAR1

Evidence Support:

Prediction-Evidence	miRanda//RNAHybrid//Targetscan
Support Database	VmiReg