Detail Information

Basic Information:


  VIRBase ID:  

VHID00491565

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-8-5p:           BCLAF1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol kshv-miR-K12-8-5p BCLAF1
miRBase
Accession/Entrez ID		 MIMAT0015216 9774
Organism Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV) Homo sapiens
Category miRNA mRNA
Alias - bK211L9.1//BTF

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR BCLAF1
chr6:136607070(-) A-I      intronic
chr6:136585549(-) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase BCLAF1
chr6:136578085-136578086(-) m6A 3'UTR       27773535
chr6:136580764-136580765(-) m6A 3'UTR//intron       24981863
chr6:136580775-136580776(-) m6A 3'UTR//intron       24981863
chr6:136580780-136580781(-) m6A 3'UTR//intron       24981863
chr6:136580790-136580791(-) m6A 3'UTR//intron       24981863
chr6:136580803-136580804(-) m6A 3'UTR//intron       24981863
chr6:136580852-136580853(-) m6A 3'UTR//intron       24981863
chr6:136582081-136582082(-) m6A 3'UTR//exon//intron       27773535
chr6:136582215-136582216(-) m6A 3'UTR//exon       24981863//28052920//27773535//22608085
chr6:136582421-136582422(-) m6A 3'UTR//CDS//exon       24209618//24981863//28052920//27773535//27371828//22608085
chr6:136582449-136582450(-) m6A 3'UTR//CDS//exon       24209618//24981863//28052920//27773535//27371828//22608085
chr6:136582497-136582498(-) m6A 3'UTR//CDS//exon       24209618//24981863//28052920//27773535//27371828//22608085
chr6:136588223-136588224(-) m6A 3'UTR//CDS//exon//intron       24981863//27773535//27371828//22608085
chr6:136588251-136588252(-) m6A 3'UTR//CDS//exon//intron       24981863//27773535//27371828
chr6:136588267-136588268(-) m6A 3'UTR//CDS//exon//intron       24981863//27773535//27371828
chr6:136589304-136589305(-) m6A 3'UTR//CDS//exon       27773535
chr6:136589361-136589362(-) m6A 3'UTR//CDS//exon       27773535
chr6:136589473-136589474(-) m6A 3'UTR//CDS//exon//intron       24981863//27773535
chr6:136589709-136589710(-) m6A exon//intron       27773535
chr6:136589731-136589732(-) m6A exon//intron       27773535
chr6:136589736-136589737(-) m6A exon//intron       27773535
chr6:136589764-136589765(-) m6A exon//intron       27773535
chr6:136590561-136590562(-) m6A exon//intron       24981863
chr6:136590617-136590618(-) m6A 3'UTR//CDS//exon       24981863//27773535
chr6:136594254-136594255(-) m6A 3'UTR//CDS//exon       27773535
chr6:136596818-136596819(-) m6A 3'UTR//CDS       27773535
chr6:136597142-136597143(-) m6A CDS//intron       24284625//24981863//27773535//22608085
chr6:136597182-136597183(-) m6A CDS//intron       24284625//24981863//27773535//22608085
chr6:136597217-136597218(-) m6A CDS//intron       24284625//24209618//24981863//28052920//27773535//22608085
chr6:136597272-136597273(-) m6A CDS//intron       24284625//24209618//24981863//28052920//27773535//22608085
chr6:136597282-136597283(-) m6A CDS//intron       24284625//24209618//24981863//28052920//27773535//22575960//22608085
chr6:136597357-136597358(-) m6A CDS//intron       24284625//24209618//24981863//28052920//27773535//27371828//22575960//22608085
chr6:136597435-136597436(-) m6A CDS//intron       24284625//24209618//24981863//28052920//27773535//27371828//22575960//22608085
chr6:136597449-136597450(-) m6A CDS//intron       24284625//24209618//24981863//28052920//27773535//27371828//22575960//22608085
chr6:136597489-136597490(-) m6A CDS//intron       24284625//24981863//27773535//27371828//22608085
chr6:136599021-136599022(-) m6A CDS       24284625//27773535//27371828
chr6:136599030-136599031(-) m6A CDS       24284625//27773535//27371828
chr6:136599108-136599109(-) m6A CDS       27773535
chr6:136599442-136599443(-) m6A CDS       24284625//25456834//24981863//28052920//27773535//22608085
chr6:136599460-136599461(-) m6A CDS       24284625//25456834//24981863//28052920//27773535//22608085
chr6:136599502-136599503(-) m6A CDS       24284625//25456834//24981863//28052920//27773535//22608085
chr6:136599526-136599527(-) m6A CDS       24284625//25456834//24981863//28052920//27773535//22608085
chr6:136603756-136603757(-) m6A 5'UTR//exon       24284625
chr6:136610869-136610870(-) m6A 5'UTR//exon       24284625//24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate BCLAF1
Chromatin HCC cell line (HepG2)|K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol HCC cell line (HepG2)|K562 cells     -
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm HCC cell line (HepG2)|K562 cells     -
Nucleus Colon cancer cells     24393600
Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -
Ribosome HEK-293 cells     22199352

Interaction Network (The top 100 interactions):


Interactor1: kshv-miR-K12-8-5p
Interactor2: BCLAF1

Evidence Support:


Weak-Evidence HITS-CLIP
Support Database ViRBase

References:


PMID 17381317 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line BCBL1 cells Interactor2 expression None
Description Recovery of previously experimentally verified targets of KSHV miRNAs by Ago-HITS-CLIP.

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