Basic Information:

  VIRBase ID:  

VHID00491458

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-8-5p:  MIMAT0015216          GTF3C5:  NM_012087     

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Interactor Information:

	Interactor1	Interactor2
Symbol	kshv-miR-K12-8-5p	GTF3C5
miRBase Accession/Entrez ID	MIMAT0015216	9328
Organism	Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	TFiiiC2-63//TFIIIC63//TFIIICepsilon

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	GTF3C5	chr9:135928412(+) A-I      intronic chr9:135928349(+) A-I      intronic chr9:135928251(+) A-I      intronic chr9:135923093(+) A-I      intronic chr9:135923476(+) A-I      intronic chr9:135921481(+) A-I      intronic chr9:135923623(+) A-I      intronic chr9:135921122(+) A-I      intronic chr9:135923450(+) A-I      intronic chr9:135923314(+) A-I      intronic chr9:135923311(+) A-I      intronic chr9:135923256(+) A-I      intronic chr9:135921503(+) A-I      intronic chr9:135923048(+) A-I      intronic chr9:135923038(+) A-I      intronic chr9:135923026(+) A-I      intronic chr9:135923009(+) A-I      intronic chr9:135923002(+) A-I      intronic chr9:135922960(+) A-I      intronic chr9:135922948(+) A-I      intronic chr9:135921674(+) A-I      intronic chr9:135921537(+) A-I      intronic chr9:135921506(+) A-I      intronic chr9:135921458(+) A-I      intronic chr9:135923238(+) A-I      intronic chr9:135921136(+) A-I      intronic chr9:135921088(+) A-I      intronic chr9:135921067(+) A-I      intronic chr9:135923183(+) A-I      intronic chr9:135923161(+) A-I      intronic chr9:135923109(+) A-I      intronic chr9:135928857(+) A-I      intronic chr9:135928818(+) A-I      intronic chr9:135928815(+) A-I      intronic chr9:135928791(+) A-I      intronic chr9:135928427(+) A-I      intronic chr9:135921480(+) A-I      intronic chr9:135922989(+) A-I      intronic chr9:135928781(+) A-I      intronic chr9:135921153(+) A-I      intronic chr9:135921504(+) A-I      intronic chr9:135919417(+) A-I      intronic chr9:135921706(+) A-I      intronic chr9:135921702(+) A-I      intronic chr9:135921204(+) A-I      intronic chr9:135921479(+) A-I      intronic chr9:135923405(+) A-I      intronic chr9:135923627(+) A-I      intronic chr9:135921701(+) A-I      intronic chr9:135923630(+) A-I      intronic chr9:135923451(+) A-I      intronic chr9:135923700(+) A-I      intronic chr9:135923646(+) A-I      intronic chr9:135921104(+) A-I      intronic chr9:135921484(+) A-I      intronic chr9:135928790(+) A-I      intronic chr9:135921472(+) A-I      intronic chr9:135921577(+) A-I      intronic chr9:135923461(+) A-I      intronic chr9:135928407(+) A-I      intronic chr9:135923383(+) A-I      intronic chr9:135921628(+) A-I      intronic chr9:135923119(+) A-I      intronic chr9:135923191(+) A-I      intronic chr9:135921589(+) A-I      intronic chr9:135923413(+) A-I      intronic chr9:135923271(+) A-I      intronic chr9:135919412(+) A-I      intronic chr9:135921276(+) A-I      intronic chr9:135919403(+) A-I      intronic chr9:135921603(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	GTF3C5	chr9:135923461(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	GTF3C5	chr9:135906135-135906136(+) m6A 5'UTR       24284625//24981863//22608085 chr9:135906159-135906160(+) m6A 5'UTR       24284625//24981863//22608085 chr9:135906193-135906194(+) m6A 5'UTR       24284625//24981863//22608085 chr9:135906216-135906217(+) m6A 5'UTR       24284625//24981863//22608085 chr9:135906328-135906329(+) m6A 5'UTR//intron       24284625//24209618//25456834//24981863//22608085 chr9:135906368-135906369(+) m6A 5'UTR//intron       24284625//24209618//25456834//24981863//22608085 chr9:135917483-135917484(+) m6A CDS//intron       24284625 chr9:135917522-135917523(+) m6A CDS//intron       24284625 chr9:135930544-135930545(+) m6A 3'UTR//exon//intron       - chr9:135930785-135930786(+) m6A intron       - chr9:135932228-135932229(+) m6A CDS//exon       24284625 chr9:135932247-135932248(+) m6A CDS//exon       24284625 chr9:135932273-135932274(+) m6A CDS//exon       24284625//22575960//22608085 chr9:135933305-135933306(+) m6A CDS//exon       24284625//25456834//24981863//27773535//22575960//22608085 chr9:135933343-135933344(+) m6A CDS//exon       24284625//25456834//24981863//22575960//22608085 chr9:135933356-135933357(+) m6A CDS//exon       24284625//25456834//24981863//22575960//22608085 chr9:135933402-135933403(+) m6A 3'UTR//exon       24284625//25456834//24981863//22575960//22608085 chr9:135933575-135933576(+) m6A 3'UTR       24284625//22608085 chr9:135933614-135933615(+) m6A 3'UTR       24284625//24981863//22608085 chr9:135933666-135933667(+) m6A 3'UTR       24284625//25456834//24981863//22575960//22608085 chr9:135933874-135933875(+) m6A 3'UTR       24284625//25456834//22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	GTF3C5	Chromatin K562 cells     - Cytosol HCC cell line (HepG2)     - Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus K562 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: kshv-miR-K12-8-5p
Interactor2: GTF3C5

Evidence Support:

Prediction-Evidence	miRanda//Targetscan
Support Database	VmiReg