Basic Information:

  VIRBase ID:  

VHID00491200

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-8-5p:  MIMAT0015216          TNNI1:  NM_003281     

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Interactor Information:

	Interactor1	Interactor2
Symbol	kshv-miR-K12-8-5p	TNNI1
miRBase Accession/Entrez ID	MIMAT0015216	7135
Organism	Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	SSTNI//TNN1

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	TNNI1	chr1:201374410(-) A-I      3'UTR

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	TNNI1	chr1:201374410(-) A-I exon 3'UTR    19478186

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	TNNI1	chr1:201374535-201374536(-) m6A 3'UTR       25456834 chr1:201374589-201374590(-) m6A 3'UTR       25456834 chr1:201374602-201374603(-) m6A 3'UTR       25456834 chr1:201374724-201374725(-) m6A 3'UTR       25456834

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	TNNI1	Cytoplasm Nasopharyngeal carcinoma cells     20498841 Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleus Nasopharyngeal carcinoma cells     20498841 Nucleus HCC cell line (HepG2)     -

Interaction Network (The top 100 interactions):

Interactor1: kshv-miR-K12-8-5p
Interactor2: TNNI1

Evidence Support:

Prediction-Evidence	miRanda//PITA//Targetscan
Support Database	VmiReg