Basic Information:

  VIRBase ID:  

VHID00490428

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-8-5p:  MIMAT0015216          FGFR3:  NR_148971     

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Interactor Information:

	Interactor1	Interactor2
Symbol	kshv-miR-K12-8-5p	FGFR3
miRBase Accession/Entrez ID	MIMAT0015216	2261
Organism	Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	ACH//CD333//CEK2//HSFGFR3EX//JTK4

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	FGFR3	chr4:1807329-1807330(+) Gm 3'UTR//CDS//exon       - chr4:1807341-1807342(+) Am 3'UTR//CDS//exon       - chr4:1808852-1808853(+) m6A 3'UTR//CDS       24284625 chr4:1808894-1808895(+) m6A 3'UTR//CDS       24284625//22575960 chr4:1809069-1809070(+) m6A 3'UTR       24284625//25456834//24981863//22608085 chr4:1809088-1809089(+) m6A 3'UTR       24284625//25456834//24981863//22608085 chr4:1809371-1809372(+) m6A 3'UTR       24284625 chr4:1809517-1809518(+) m6A 3'UTR       24284625//24981863//27773535//22608085 chr4:1809581-1809582(+) m6A 3'UTR       24284625//24981863//27773535

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	FGFR3	Chromatin K562 cells     - Cytosol HCC cell line (HepG2)     - Exosome Blood     - Membrane HCC cell line (HepG2)|K562 cells     - Nucleolus K562 cells     - Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: kshv-miR-K12-8-5p
Interactor2: FGFR3

Evidence Support:

Prediction-Evidence	miRanda//RNAHybrid//Targetscan
Support Database	VmiReg