Basic Information:

  VIRBase ID:  

VHID00490359

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-8-5p:  MIMAT0015216          LPAR1:  NM_001387477     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	kshv-miR-K12-8-5p	LPAR1
miRBase Accession/Entrez ID	MIMAT0015216	1902
Organism	Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	edg-2//EDG2//Gpcr26//LPA1//Mrec1.3//rec.1.3//vzg-1//VZG1

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	LPAR1	chr9:113797699(-) A-I      intronic chr9:113797587(-) A-I      intronic chr9:113762274(-) A-I      intronic chr9:113762265(-) A-I      intronic chr9:113727315(-) A-I      intronic chr9:113727288(-) A-I      intronic chr9:113727279(-) A-I      intronic chr9:113727275(-) A-I      intronic chr9:113680329(-) A-I      intronic chr9:113680261(-) A-I      intronic chr9:113679598(-) A-I      intronic chr9:113679426(-) A-I      intronic chr9:113673820(-) A-I      intronic chr9:113648215(-) A-I      intronic chr9:113764513(-) A-I      intronic chr9:113764514(-) A-I      intronic chr9:113797658(-) A-I      intronic chr9:113797650(-) A-I      intronic chr9:113648205(-) A-I      intronic chr9:113648177(-) A-I      intronic chr9:113648151(-) A-I      intronic chr9:113648160(-) A-I      intronic chr9:113641590(-) A-I      intronic chr9:113764560(-) A-I      intronic chr9:113764550(-) A-I      intronic chr9:113764542(-) A-I      intronic chr9:113764515(-) A-I      intronic chr9:113764512(-) A-I      intronic chr9:113785074(-) A-I      intronic chr9:113780057(-) A-I      intronic chr9:113797684(-) A-I      intronic chr9:113657039(-) A-I      intronic chr9:113795899(-) A-I      intronic chr9:113797640(-) A-I      intronic chr9:113789713(-) A-I      intronic chr9:113727375(-) A-I      intronic chr9:113795970(-) A-I      intronic chr9:113762149(-) A-I      intronic chr9:113680449(-) A-I      intronic chr9:113654887(-) A-I      intronic chr9:113797716(-) A-I      intronic chr9:113680397(-) A-I      intronic chr9:113762123(-) A-I      intronic chr9:113679583(-) A-I      intronic chr9:113797586(-) A-I      intronic chr9:113797777(-) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	LPAR1	chr9:113635717-113635718(-) m6A 3'UTR       27773535 chr9:113635752-113635753(-) m6A 3'UTR       27773535 chr9:113635919-113635920(-) m6A 3'UTR       27773535 chr9:113636090-113636091(-) m6A 3'UTR       24981863//22608085 chr9:113636151-113636152(-) m6A 3'UTR       24981863//22608085 chr9:113636165-113636166(-) m6A 3'UTR       24981863//22608085 chr9:113636803-113636804(-) m6A 3'UTR       27773535 chr9:113637187-113637188(-) m6A 3'UTR       24981863 chr9:113637223-113637224(-) m6A 3'UTR       24981863//27773535 chr9:113637234-113637235(-) m6A 3'UTR       24981863//27773535 chr9:113637241-113637242(-) m6A 3'UTR       24981863//27773535 chr9:113637279-113637280(-) m6A 3'UTR       24981863//27773535//22608085 chr9:113637402-113637403(-) m6A 3'UTR       24981863//26404942//27773535//22608085 chr9:113637416-113637417(-) m6A 3'UTR       24981863//26404942//27773535//22608085 chr9:113637440-113637441(-) m6A 3'UTR       24981863//26404942//27773535//22608085 chr9:113637540-113637541(-) m6A 3'UTR       25456834//24981863//26404942//27773535//22608085 chr9:113637550-113637551(-) m6A 3'UTR       25456834//24981863//26404942//27773535//27371828//22575960//22608085 chr9:113637580-113637581(-) m6A 3'UTR       25456834//24981863//26404942//27773535//27371828//22575960//22608085 chr9:113637653-113637654(-) m6A 3'UTR       25456834//24981863//27773535//27371828//22575960//22608085 chr9:113637679-113637680(-) m6A 3'UTR       25456834//24981863//27773535//22575960//22608085 chr9:113637692-113637693(-) m6A 3'UTR       25456834//24981863//27773535//22575960//22608085 chr9:113637770-113637771(-) m6A CDS       24981863//27773535//22608085 chr9:113637797-113637798(-) m6A CDS       24981863//27773535//22608085 chr9:113637875-113637876(-) m6A CDS       24981863//27773535 chr9:113637981-113637982(-) m6A CDS       27773535 chr9:113703718-113703719(-) m6A CDS       - chr9:113703758-113703759(-) m6A CDS       22608085 chr9:113703787-113703788(-) m6A CDS       24981863//22608085 chr9:113703933-113703934(-) m6A CDS       24981863//26404942//22608085 chr9:113703976-113703977(-) m6A CDS       24981863//26404942//27773535//22608085 chr9:113704148-113704149(-) m6A CDS       25456834//24981863//26404942//27773535//22608085 chr9:113704163-113704164(-) m6A CDS       25456834//24981863//26404942//27773535//22608085 chr9:113704209-113704210(-) m6A CDS       25456834//24981863//26404942//27773535//22608085 chr9:113704331-113704332(-) m6A CDS       24981863//26404942//27773535//22608085 chr9:113704356-113704357(-) m6A CDS       24981863//26404942//27773535//22608085 chr9:113704430-113704431(-) m6A CDS       24981863 chr9:113734458-113734459(-) m6A 5'UTR       27773535 chr9:113735779-113735780(-) m6A 5'UTR//intron       27773535

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	LPAR1	Exosome Blood     -

Interaction Network (The top 100 interactions):

Interactor1: kshv-miR-K12-8-5p
Interactor2: LPAR1

Evidence Support:

Prediction-Evidence	miRanda//RNAHybrid
Support Database	VmiReg