Basic Information:

  VIRBase ID:  

VHID00490234

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.6040

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-8-5p:  MIMAT0015216          RCC1:  NM_001381865     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	kshv-miR-K12-8-5p	RCC1
miRBase Accession/Entrez ID	MIMAT0015216	1104
Organism	Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	CHC1//RCC1-I//SNHG3-RCC1

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	RCC1	chr1:28842043(+) A-I      intronic chr1:28854302(+) A-I      intronic chr1:28842078(+) A-I      intronic chr1:28854332(+) A-I      intronic chr1:28840583(+) A-I      intronic chr1:28842053(+) A-I      intronic chr1:28857796(+) A-I      intronic chr1:28854320(+) A-I      intronic chr1:28840671(+) A-I      intronic chr1:28840677(+) A-I      intronic chr1:28854289(+) A-I      intronic chr1:28842071(+) A-I      intronic chr1:28850429(+) A-I      intronic chr1:28846160(+) A-I      intronic chr1:28842073(+) A-I      intronic chr1:28842042(+) A-I      intronic chr1:28840678(+) A-I      intronic chr1:28840601(+) A-I      intronic chr1:28840648(+) A-I      intronic chr1:28840587(+) A-I      intronic chr1:28840497(+) A-I      intronic chr1:28840487(+) A-I      intronic chr1:28840307(+) A-I      intronic chr1:28840286(+) A-I      intronic chr1:28840130(+) A-I      intronic chr1:28839907(+) A-I      intronic chr1:28839892(+) A-I      intronic chr1:28839890(+) A-I      intronic chr1:28839806(+) A-I      intronic chr1:28839714(+) A-I      intronic chr1:28839690(+) A-I      intronic chr1:28839684(+) A-I      intronic chr1:28839559(+) A-I      intronic chr1:28839408(+) A-I      intronic chr1:28853989(+) A-I      intronic chr1:28841625(+) A-I      intronic chr1:28846484(+) A-I      intronic chr1:28846470(+) A-I      intronic chr1:28846463(+) A-I      intronic chr1:28846319(+) A-I      intronic chr1:28854406(+) A-I      intronic chr1:28846179(+) A-I      intronic chr1:28838411(+) A-I      intronic chr1:28838397(+) A-I      intronic chr1:28838314(+) A-I      intronic chr1:28846097(+) A-I      intronic chr1:28842416(+) A-I      intronic chr1:28842334(+) A-I      intronic chr1:28842186(+) A-I      intronic chr1:28842090(+) A-I      intronic chr1:28839459(+) A-I      intronic chr1:28841628(+) A-I      intronic chr1:28841614(+) A-I      intronic chr1:28841613(+) A-I      intronic chr1:28841356(+) A-I      intronic chr1:28841262(+) A-I      intronic chr1:28841261(+) A-I      intronic chr1:28841228(+) A-I      intronic chr1:28841205(+) A-I      intronic chr1:28841150(+) A-I      intronic chr1:28841126(+) A-I      intronic chr1:28839436(+) A-I      intronic chr1:28859467(+) A-I      intronic chr1:28859457(+) A-I      intronic chr1:28859428(+) A-I      intronic chr1:28840656(+) A-I      intronic chr1:28859346(+) A-I      intronic chr1:28857534(+) A-I      intronic chr1:28855883(+) A-I      intronic chr1:28855862(+) A-I      intronic chr1:28855861(+) A-I      intronic chr1:28855825(+) A-I      intronic chr1:28855622(+) A-I      intronic chr1:28855504(+) A-I      intronic chr1:28855068(+) A-I      intronic chr1:28855052(+) A-I      intronic chr1:28854993(+) A-I      intronic chr1:28854883(+) A-I      intronic chr1:28854862(+) A-I      intronic chr1:28854857(+) A-I      intronic chr1:28859386(+) A-I      intronic chr1:28854360(+) A-I      intronic chr1:28854351(+) A-I      intronic chr1:28854346(+) A-I      intronic chr1:28854338(+) A-I      intronic chr1:28854312(+) A-I      intronic chr1:28854288(+) A-I      intronic chr1:28853881(+) A-I      intronic chr1:28853845(+) A-I      intronic chr1:28853428(+) A-I      intronic chr1:28853427(+) A-I      intronic chr1:28853250(+) A-I      intronic chr1:28853207(+) A-I      intronic chr1:28851147(+) A-I      intronic chr1:28851137(+) A-I      intronic chr1:28847934(+) A-I      intronic chr1:28853821(+) A-I      intronic chr1:28841352(+) A-I      intronic chr1:28840226(+) A-I      intronic chr1:28854758(+) A-I      intronic chr1:28855835(+) A-I      intronic chr1:28855970(+) A-I      intronic chr1:28838452(+) A-I      intronic chr1:28841347(+) A-I      intronic chr1:28839715(+) A-I      intronic chr1:28854427(+) A-I      intronic chr1:28855934(+) A-I      intronic chr1:28853864(+) A-I      intronic chr1:28857673(+) A-I      intronic chr1:28842679(+) A-I      intronic chr1:28855514(+) A-I      intronic chr1:28854612(+) A-I      intronic chr1:28847586(+) A-I      intronic chr1:28839371(+) A-I      intronic chr1:28853314(+) A-I      intronic chr1:28841673(+) A-I      intronic chr1:28840657(+) A-I      intronic chr1:28851303(+) A-I      intronic chr1:28850458(+) A-I      intronic chr1:28843513(+) A-I      intronic chr1:28854710(+) A-I      intronic chr1:28850967(+) A-I      intronic chr1:28853893(+) A-I      intronic chr1:28855751(+) A-I      intronic chr1:28839811(+) A-I      intronic chr1:28841276(+) A-I      intronic chr1:28859594(+) A-I      intronic chr1:28853775(+) A-I      intronic chr1:28857683(+) A-I      intronic chr1:28846166(+) A-I      intronic chr1:28842494(+) A-I      intronic chr1:28857896(+) A-I      intronic chr1:28855019(+) A-I      intronic chr1:28855669(+) A-I      intronic chr1:28855081(+) A-I      intronic chr1:28861253(+) A-I      intronic chr1:28840674(+) A-I      intronic chr1:28839387(+) A-I      intronic chr1:28854023(+) A-I      intronic chr1:28838066(+) A-I      intronic chr1:28852767(+) A-I      intronic chr1:28840297(+) A-I      intronic chr1:28841243(+) A-I      intronic chr1:28853795(+) A-I      intronic chr1:28857630(+) A-I      intronic chr1:28855479(+) A-I      intronic chr1:28840238(+) A-I      intronic chr1:28850468(+) A-I      intronic chr1:28837982(+) A-I      intronic chr1:28841682(+) A-I      intronic chr1:28839975(+) A-I      intronic chr1:28839645(+) A-I      intronic chr1:28840139(+) A-I      intronic chr1:28840230(+) A-I      intronic chr1:28839807(+) A-I      intronic chr1:28861167(+) A-I      intronic chr1:28839781(+) A-I      intronic chr1:28853801(+) A-I      intronic chr1:28846149(+) A-I      intronic chr1:28854603(+) A-I      intronic chr1:28839516(+) A-I      intronic chr1:28840158(+) A-I      intronic chr1:28840153(+) A-I      intronic chr1:28840644(+) A-I      intronic chr1:28840560(+) A-I      intronic chr1:28853926(+) A-I      intronic chr1:28846454(+) A-I      intronic chr1:28849317(+) A-I      intronic chr1:28841073(+) A-I      intronic chr1:28857879(+) A-I      intronic chr1:28840743(+) A-I      intronic chr1:28852732(+) A-I      intronic chr1:28841765(+) A-I      intronic chr1:28841851(+) A-I      intronic chr1:28839968(+) A-I      intronic chr1:28838652(+) A-I      intronic chr1:28840242(+) A-I      intronic chr1:28855020(+) A-I      intronic chr1:28850981(+) A-I      intronic chr1:28854401(+) A-I      intronic chr1:28838360(+) A-I      intronic chr1:28853800(+) A-I      intronic chr1:28840679(+) A-I      intronic chr1:28839688(+) A-I      intronic chr1:28839644(+) A-I      intronic chr1:28840114(+) A-I      intronic chr1:28854704(+) A-I      intronic chr1:28860415(+) A-I      intronic chr1:28840231(+) A-I      intronic chr1:28840365(+) A-I      intronic chr1:28846159(+) A-I      intronic chr1:28855776(+) A-I      intronic chr1:28847758(+) A-I      intronic chr1:28847471(+) A-I      intronic chr1:28839484(+) A-I      intronic chr1:28841098(+) A-I      intronic chr1:28854268(+) A-I      intronic chr1:28854453(+) A-I      intronic chr1:28847512(+) A-I      intronic chr1:28840287(+) A-I      intronic chr1:28840608(+) A-I      intronic chr1:28840236(+) A-I      intronic chr1:28851142(+) A-I      intronic chr1:28839776(+) A-I      intronic chr1:28839800(+) A-I      intronic chr1:28855439(+) A-I      intronic chr1:28851108(+) A-I      intronic chr1:28839969(+) A-I      intronic chr1:28839927(+) A-I      intronic chr1:28839871(+) A-I      intronic chr1:28839846(+) A-I      intronic chr1:28855905(+) A-I      intronic chr1:28839887(+) A-I      intronic chr1:28860464(+) A-I      intronic chr1:28857662(+) A-I      intronic chr1:28853188(+) A-I      intronic chr1:28839848(+) A-I      intronic chr1:28853901(+) A-I      intronic chr1:28854525(+) A-I      intronic chr1:28855795(+) A-I      intronic chr1:28840713(+) A-I      intronic chr1:28842516(+) A-I      intronic chr1:28838229(+) A-I      intronic chr1:28839547(+) A-I      intronic chr1:28839528(+) A-I      intronic chr1:28839710(+) A-I      intronic chr1:28853941(+) A-I      intronic chr1:28839448(+) A-I      intronic chr1:28851016(+) A-I      intronic chr1:28847449(+) A-I      intronic chr1:28841343(+) A-I      intronic chr1:28851350(+) A-I      intronic chr1:28854560(+) A-I      intronic chr1:28841019(+) A-I      intronic chr1:28853805(+) A-I      intronic chr1:28855475(+) A-I      intronic chr1:28839855(+) A-I      intronic chr1:28854817(+) A-I      intronic chr1:28853927(+) A-I      intronic chr1:28838357(+) A-I      intronic chr1:28853265(+) A-I      intronic chr1:28854848(+) A-I      intronic chr1:28860954(+) A-I      intronic chr1:28842705(+) A-I      intronic chr1:28838088(+) A-I      intronic chr1:28854369(+) A-I      intronic chr1:28841285(+) A-I      intronic chr1:28840109(+) A-I      intronic chr1:28840570(+) A-I      intronic chr1:28841608(+) A-I      intronic chr1:28838063(+) A-I      intronic chr1:28840611(+) A-I      intronic chr1:28853146(+) A-I      intronic chr1:28846216(+) A-I      intronic chr1:28842862(+) A-I      intronic chr1:28839731(+) A-I      intronic chr1:28857647(+) A-I      intronic chr1:28839882(+) A-I      intronic chr1:28857722(+) A-I      intronic chr1:28839977(+) A-I      intronic chr1:28859734(+) A-I      intronic chr1:28846211(+) A-I      intronic chr1:28851309(+) A-I      intronic chr1:28838253(+) A-I      intronic chr1:28839981(+) A-I      intronic chr1:28851274(+) A-I      intronic chr1:28861061(+) A-I      intronic chr1:28841960(+) A-I      intronic chr1:28840590(+) A-I      intronic chr1:28841681(+) A-I      intronic chr1:28840613(+) A-I      intronic chr1:28857620(+) A-I      intronic chr1:28857872(+) A-I      intronic chr1:28839368(+) A-I      intronic chr1:28860900(+) A-I      intronic chr1:28853885(+) A-I      intronic chr1:28839546(+) A-I      intronic chr1:28850968(+) A-I      intronic chr1:28839446(+) A-I      intronic chr1:28853990(+) A-I      intronic chr1:28851160(+) A-I      intronic chr1:28842736(+) A-I      intronic chr1:28850556(+) A-I      intronic chr1:28842770(+) A-I      intronic chr1:28841018(+) A-I      intronic chr1:28849247(+) A-I      intronic chr1:28840673(+) A-I      intronic chr1:28840538(+) A-I      intronic chr1:28840534(+) A-I      intronic chr1:28854510(+) A-I      intronic chr1:28840489(+) A-I      intronic chr1:28842108(+) A-I      intronic chr1:28855879(+) A-I      intronic chr1:28839370(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	RCC1	chr1:28836973(+) A-I exon 5'UTR    15342557 chr1:28836974(+) A-I exon 5'UTR    15342557 chr1:28836975(+) A-I exon 5'UTR    15342557 chr1:28836979(+) A-I exon 5'UTR    15342557 chr1:28836986(+) A-I exon 5'UTR    15342557 chr1:28836987(+) A-I exon 5'UTR    15342557 chr1:28836994(+) A-I exon 5'UTR    15342557 chr1:28837025(+) A-I exon 5'UTR    15342557 chr1:28837931(+) G-T intron -    22484847 chr1:28837932(+) A-T intron -    22484847 chr1:28838088(+) A-G intron -    22484847 chr1:28838279(+) T-C intron -    22484847 chr1:28838431(+) A-C intron -    22484847 chr1:28839368(+) A-G intron -    22484847 chr1:28839370(+) A-G intron -    22484847 chr1:28839371(+) A-G intron -    22484847 chr1:28839446(+) A-G intron -    22484847 chr1:28839528(+) A-G intron -    22484847 chr1:28839546(+) A-G intron -    22484847 chr1:28839547(+) A-G intron -    22484847 chr1:28839644(+) A-G intron -    22484847 chr1:28839688(+) A-G intron -    22484847 chr1:28839705(+) C-T intron -    22484847 chr1:28839710(+) A-G intron -    22484847 chr1:28839781(+) A-G intron -    22484847 chr1:28839800(+) A-G intron -    22484847 chr1:28839807(+) A-G intron -    22484847 chr1:28839846(+) A-G intron -    22484847 chr1:28839848(+) A-G intron -    22484847 chr1:28839895(+) T-C intron -    22484847 chr1:28839927(+) A-G intron -    22484847 chr1:28839977(+) A-G intron -    22484847 chr1:28840109(+) A-G intron -    22484847 chr1:28840114(+) A-G intron -    22484847 chr1:28840226(+) A-G intron -    22484847 chr1:28840260(+) C-G intron -    22484847 chr1:28840365(+) A-G intron -    22484847 chr1:28840560(+) A-G intron -    22484847 chr1:28840608(+) A-G intron -    22484847 chr1:28840644(+) A-G intron -    22484847 chr1:28841608(+) A-G intron -    22484847 chr1:28843557(+) T-C intron -    22484847 chr1:28846149(+) A-G intron -    22484847 chr1:28846159(+) A-G intron -    22484847 chr1:28846166(+) A-G intron -    22484847 chr1:28846216(+) A-G intron -    22484847 chr1:28847586(+) A-G intron -    22484847 chr1:28851274(+) A-G intron -    22484847 chr1:28851303(+) A-G intron -    22484847 chr1:28853188(+) A-G intron -    22484847 chr1:28853265(+) A-G intron -    22484847 chr1:28853775(+) A-G intron -    22484847 chr1:28853800(+) A-G intron -    22484847 chr1:28853801(+) A-G intron -    22484847 chr1:28853805(+) A-G intron -    22484847 chr1:28853893(+) A-G intron -    22484847 chr1:28853941(+) A-G intron -    22484847 chr1:28853990(+) A-G intron -    22484847 chr1:28854268(+) A-G intron -    22484847 chr1:28854427(+) A-G intron -    22484847 chr1:28855019(+) A-G intron -    22484847 chr1:28855020(+) A-G intron -    22484847 chr1:28855475(+) A-G intron -    22484847 chr1:28855479(+) A-G intron -    22484847 chr1:28855751(+) A-G intron -    22484847 chr1:28855879(+) A-G intron -    22484847 chr1:28857570(+) G-A intron -    22484847 chr1:28857620(+) A-G intron -    22484847 chr1:28857647(+) A-G intron -    22484847 chr1:28857673(+) A-G intron -    22484847 chr1:28857852(+) C-T intron -    22484847 chr1:28857872(+) A-G intron -    22484847 chr1:28857879(+) A-G intron -    22484847 chr1:28859594(+) A-G intron -    22484847 chr1:28860900(+) A-G intron -    22484847 chr1:28860954(+) A-G intron -    22484847 chr1:28861253(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	RCC1	chr1:28833099-28833100(+) m6A intron       22575960 chr1:28833107-28833108(+) m6A intron       22575960 chr1:28833948-28833949(+) Tm intron       - chr1:28835140-28835141(+) Tm intron       - chr1:28835237-28835238(+) m6A intron       25456834//22575960 chr1:28835421-28835422(+) m6A intron       27773535 chr1:28835466-28835467(+) m6A intron       27773535 chr1:28836533-28836534(+) m6A intron       22575960 chr1:28836593-28836594(+) m6A 5'UTR//intron       27773535//22575960 chr1:28836648-28836649(+) m6A intron       22575960 chr1:28836669-28836670(+) m6A intron       22575960 chr1:28836680-28836681(+) m6A intron       22575960 chr1:28836719-28836720(+) m6A intron       - chr1:28836801-28836802(+) m6A intron       - chr1:28843266-28843267(+) m6A 5'UTR//intron       24981863//27773535 chr1:28843369-28843370(+) m6A 5'UTR//intron       24981863//27773535 chr1:28845398-28845399(+) m6A 5'UTR//CDS//intron       24981863 chr1:28845434-28845435(+) m6A 5'UTR//CDS//intron       24209618//24981863 chr1:28845447-28845448(+) m6A 5'UTR//CDS//intron       24284625//24209618//24981863 chr1:28847198-28847199(+) Am intron       - chr1:28857117-28857118(+) m6A CDS//intron       24284625//22575960 chr1:28858339-28858340(+) m6A CDS       24284625//22575960 chr1:28858415-28858416(+) m1A CDS       26863196 chr1:28858725-28858726(+) m6A CDS//exon       24284625//22575960 chr1:28858803-28858804(+) m6A CDS//exon       22575960 chr1:28861830-28861831(+) m6A CDS//exon       24284625 chr1:28862809-28862810(+) m6A CDS//exon       24284625 chr1:28864434-28864435(+) m6A CDS       24284625//24981863//22575960//22608085 chr1:28864445-28864446(+) m6A CDS       24284625//24981863//26404942//22575960//22608085 chr1:28864502-28864503(+) m6A CDS       24284625//25456834//24981863//26404942//22575960//22608085 chr1:28864509-28864510(+) m6A CDS       24284625//25456834//24981863//26404942//22575960//22608085 chr1:28864568-28864569(+) m6A 3'UTR       24284625//25456834//24981863//26404942//22575960//22608085 chr1:28864656-28864657(+) m6A 3'UTR       24284625//25456834//24981863//22575960//22608085 chr1:28864705-28864706(+) m6A 3'UTR       24284625//25456834//24981863//22575960//22608085 chr1:28864730-28864731(+) m6A 3'UTR       24284625//25456834//24981863//22575960//22608085 chr1:28864750-28864751(+) m6A 3'UTR       24284625//25456834//24981863//22608085 chr1:28864842-28864843(+) m6A 3'UTR       24284625 chr1:28864848-28864849(+) m6A 3'UTR       24284625 chr1:28864952-28864953(+) m6A 3'UTR       24284625//24209618//24981863//27773535//22575960//22608085 chr1:28864987-28864988(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr1:28865066-28865067(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr1:28865081-28865082(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr1:28865229-28865230(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr1:28865292-28865293(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22608085 chr1:28865339-28865340(+) m6A 3'UTR       24284625//24981863//27773535//22608085 chr1:28865361-28865362(+) m6A 3'UTR       24284625//24981863//27773535//22608085 chr1:28865379-28865380(+) m6A 3'UTR       24284625//24981863//27773535//22608085 chr1:28865455-28865456(+) m6A 3'UTR       24981863//27773535

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	RCC1	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Cytosol HCC cell line (HepG2)|K562 cells     - Exosome Blood     - Membrane K562 cells     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     - Ribosome HEK-293 cells     22199352 Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: kshv-miR-K12-8-5p
Interactor2: RCC1

Evidence Support:

Weak-Evidence	PAR-CLIP
Prediction-Evidence	miRanda//PARalyzer//RNAHybrid//Targetscan
Support Database	ViRBase//VmiReg

References:

PMID	22100165	Target region	3'UTR
Source	ViRBase	Interactor1 expression	None
Tissue or cell line	BC-3 cells	Interactor2 expression	None
Description	Using PAR-CLIP, a technology which allows the direct and transcriptome-wide identification of miRNA targets, we delineate the target sites for all viral and cellular miRNAs expressed in PEL cell lines. The resulting data set revealed that KSHV miRNAs directly target more than 2000 cellular mRNAs, including many involved in pathways relevant to KSHV pathogenesis. Moreover, 58% of these mRNAs are also targeted by EBV miRNAs, via distinct binding sites.Clusters with seed matches to expressed miRNAs were considered candidate target sites. Of the clusters mapping to human 3'UTRs, 69% (BC-1) and 70% (BC-3) had seed matches to expressed miRNAs (Tables S6).Table S6B BC-3 derived 3'UTR clusters with seed matches to expressed miRNAs.