Detail Information

Basic Information:


  VIRBase ID:  

VHID00490181

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-8-5p:           CACNA1C:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol kshv-miR-K12-8-5p CACNA1C
miRBase
Accession/Entrez ID		 MIMAT0015216 775
Organism Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV) Homo sapiens
Category miRNA mRNA
Alias - CACH2//CACN2//CACNL1A1//CaV1.2//CCHL1A1//LQT8//TS//TS. LQT8

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR CACNA1C
chr12:2290175(+) A-I      intronic
chr12:2187233(+) A-I      intronic
chr12:2583802(+) A-I      intronic
chr12:2376807(+) A-I      intronic
chr12:2376820(+) A-I      intronic
chr12:2376821(+) A-I      intronic
chr12:2187263(+) A-I      intronic
chr12:2376827(+) A-I      intronic
chr12:2290169(+) A-I      intronic
chr12:2290170(+) A-I      intronic
chr12:2290172(+) A-I      intronic
chr12:2290174(+) A-I      intronic
chr12:2187223(+) A-I      intronic
chr12:2290182(+) A-I      intronic
chr12:2290189(+) A-I      intronic
chr12:2187200(+) A-I      intronic
chr12:2290675(+) A-I      intronic
chr12:2290200(+) A-I      intronic
chr12:2583807(+) A-I      intronic
chr12:2290672(+) A-I      intronic
chr12:2290713(+) A-I      intronic
chr12:2290714(+) A-I      intronic
chr12:2290760(+) A-I      intronic
chr12:2290762(+) A-I      intronic
chr12:2187228(+) A-I      intronic
chr12:2290141(+) A-I      intronic
chr12:2290144(+) A-I      intronic
chr12:2290146(+) A-I      intronic
chr12:2290147(+) A-I      intronic
chr12:2257905(+) A-I      intronic
chr12:2583765(+) A-I      intronic
chr12:2583768(+) A-I      intronic
chr12:2226322(+) A-I      intronic
chr12:2190682(+) A-I      intronic
chr12:2272166(+) A-I      intronic
chr12:2209501(+) A-I      intronic
chr12:2272203(+) A-I      intronic
chr12:2226344(+) A-I      intronic
chr12:2272244(+) A-I      intronic
chr12:2288013(+) A-I      intronic
chr12:2257737(+) A-I      intronic
chr12:2257775(+) A-I      intronic
chr12:2209491(+) A-I      intronic
chr12:2209492(+) A-I      intronic
chr12:2288018(+) A-I      intronic
chr12:2316794(+) A-I      intronic
chr12:2359156(+) A-I      intronic
chr12:2359173(+) A-I      intronic
chr12:2583763(+) A-I      intronic
chr12:2409603(+) A-I      intronic
chr12:2288130(+) A-I      intronic
chr12:2359181(+) A-I      intronic
chr12:2316905(+) A-I      intronic
chr12:2232323(+) A-I      intronic
chr12:2232314(+) A-I      intronic
chr12:2268527(+) A-I      intronic
chr12:2272194(+) A-I      intronic
chr12:2267636(+) A-I      intronic
chr12:2496530(+) A-I      intronic
chr12:2407485(+) A-I      intronic
chr12:2226419(+) A-I      intronic
chr12:2226179(+) A-I      intronic
chr12:2257831(+) A-I      intronic
chr12:2209356(+) A-I      intronic
chr12:2409749(+) A-I      intronic
chr12:2268875(+) A-I      intronic
chr12:2189276(+) A-I      intronic
chr12:2288121(+) A-I      intronic
chr12:2268426(+) A-I      intronic
chr12:2226416(+) A-I      intronic
chr12:2407545(+) A-I      intronic
chr12:2268889(+) A-I      intronic
chr12:2286942(+) A-I      intronic
chr12:2287065(+) A-I      intronic
chr12:2267586(+) A-I      intronic
chr12:2268581(+) A-I      intronic
chr12:2407565(+) A-I      intronic
chr12:2268441(+) A-I      intronic
chr12:2226180(+) A-I      intronic
chr12:2409588(+) A-I      intronic
chr12:2409586(+) A-I      intronic
chr12:2225740(+) A-I      intronic
chr12:2359030(+) A-I      intronic
chr12:2268435(+) A-I      intronic
chr12:2503070(+) A-I      intronic
chr12:2583829(+) A-I      intronic
chr12:2504569(+) A-I      intronic
chr12:2288185(+) A-I      intronic
chr12:2268405(+) A-I      intronic
chr12:2496409(+) A-I      intronic
chr12:2552278(+) A-I      intronic
chr12:2290666(+) A-I      intronic
chr12:2530823(+) A-I      intronic
chr12:2209340(+) A-I      intronic
chr12:2246631(+) A-I      intronic
chr12:2290727(+) A-I      intronic
chr12:2290698(+) A-I      intronic
chr12:2268897(+) A-I      intronic
chr12:2290756(+) A-I      intronic
chr12:2759651(+) A-I      intronic
chr12:2287077(+) A-I      intronic
chr12:2407604(+) A-I      intronic
chr12:2725910(+) A-I      intronic
chr12:2450128(+) A-I      intronic
chr12:2288072(+) A-I      intronic
chr12:2316761(+) A-I      intronic
chr12:2268505(+) A-I      intronic
chr12:2290642(+) A-I      intronic
chr12:2290710(+) A-I      intronic
chr12:2187243(+) A-I      intronic
chr12:2187417(+) A-I      intronic
chr12:2288156(+) A-I      intronic
chr12:2268953(+) A-I      intronic
chr12:2187215(+) A-I      intronic
chr12:2552126(+) A-I      intronic
chr12:2268896(+) A-I      intronic
chr12:2290631(+) A-I      intronic
chr12:2290888(+) A-I      intronic
chr12:2268923(+) A-I      intronic
chr12:2226275(+) A-I      intronic
chr12:2290759(+) A-I      intronic
chr12:2270160(+) A-I      intronic
chr12:2268946(+) A-I      intronic
chr12:2268554(+) A-I      intronic
chr12:2270127(+) A-I      intronic
chr12:2209357(+) A-I      intronic
chr12:2290732(+) A-I      intronic
chr12:2503090(+) A-I      intronic
chr12:2288161(+) A-I      intronic
chr12:2503057(+) A-I      intronic
chr12:2290111(+) A-I      intronic
chr12:2677540(+) A-I      intronic
chr12:2290673(+) A-I      intronic
chr12:2645637(+) A-I      intronic
chr12:2269032(+) A-I      intronic
chr12:2572882(+) A-I      intronic
chr12:2268528(+) A-I      intronic
chr12:2759650(+) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED CACNA1C
chr12:2769852(+) C-T intron -    21725310

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase CACNA1C
chr12:2694562-2694563(+) m6A CDS       -
chr12:2786980-2786981(+) m6A CDS       27371828
chr12:2788766-2788767(+) m6A CDS       -
chr12:2800243-2800244(+) m6A CDS       24209618//25456834
chr12:2800264-2800265(+) m6A CDS       25456834
chr12:2800336-2800337(+) m6A CDS       25456834
chr12:2800733-2800734(+) m6A 3'UTR       25456834
chr12:2800815-2800816(+) m6A 3'UTR       25456834
chr12:2800827-2800828(+) m6A 3'UTR       25456834

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate CACNA1C
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -

Interaction Network (The top 100 interactions):


Interactor1: kshv-miR-K12-8-5p
Interactor2: CACNA1C

Evidence Support:


Prediction-Evidence miRanda//Targetscan
Support Database VmiReg

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