Detail Information

Basic Information:


  VIRBase ID:  

VHID00488517

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-2-3p:           ERC2:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol kshv-miR-K12-2-3p ERC2
miRBase
Accession/Entrez ID		 MIMAT0015215 26059
Organism Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV) Homo sapiens
Category miRNA mRNA
Alias - CAST//CAST1//ELKSL//SPBC110//Spc110

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR ERC2
chr3:55962681(-) A-I      intronic
chr3:55962639(-) A-I      intronic
chr3:55962638(-) A-I      intronic
chr3:55962634(-) A-I      intronic
chr3:55962631(-) A-I      intronic
chr3:55962538(-) A-I      intronic
chr3:55962522(-) A-I      intronic
chr3:55962501(-) A-I      intronic
chr3:55962473(-) A-I      intronic
chr3:55962466(-) A-I      intronic
chr3:55740713(-) A-I      intronic
chr3:55587115(-) A-I      intronic
chr3:56352128(-) A-I      intronic
chr3:55962691(-) A-I      intronic
chr3:55962682(-) A-I      intronic
chr3:55587102(-) A-I      intronic
chr3:55551431(-) A-I      intronic
chr3:55551428(-) A-I      intronic
chr3:55740726(-) A-I      intronic
chr3:56394884(-) A-I      intronic
chr3:55881959(-) A-I      intronic
chr3:55710144(-) A-I      intronic
chr3:55710025(-) A-I      intronic
chr3:55686764(-) A-I      intronic
chr3:55685014(-) A-I      intronic
chr3:55741269(-) A-I      intronic
chr3:55587294(-) A-I      intronic
chr3:55685013(-) A-I      intronic
chr3:55676646(-) A-I      intronic
chr3:55609145(-) A-I      intronic
chr3:55587110(-) A-I      intronic
chr3:55609139(-) A-I      intronic
chr3:55609110(-) A-I      intronic
chr3:55600558(-) A-I      intronic
chr3:55587283(-) A-I      intronic
chr3:55587282(-) A-I      intronic
chr3:55710154(-) A-I      intronic
chr3:56352105(-) A-I      intronic
chr3:56440176(-) A-I      intronic
chr3:55830491(-) A-I      intronic
chr3:56029181(-) A-I      intronic
chr3:55547936(-) A-I      intronic
chr3:55780444(-) A-I      intronic
chr3:56300430(-) A-I      intronic
chr3:56029198(-) A-I      intronic
chr3:56461420(-) A-I      intronic
chr3:55548317(-) A-I      intronic
chr3:55747427(-) A-I      intronic
chr3:55887320(-) A-I      intronic
chr3:55554064(-) A-I      intronic
chr3:56208843(-) A-I      intronic
chr3:55840106(-) A-I      intronic
chr3:55635772(-) A-I      intronic
chr3:55587188(-) A-I      intronic
chr3:55548180(-) A-I      intronic
chr3:56454310(-) A-I      intronic
chr3:56273294(-) A-I      intronic
chr3:55686645(-) A-I      intronic
chr3:55587182(-) A-I      intronic
chr3:55926537(-) A-I      intronic
chr3:55676564(-) A-I      intronic
chr3:56032030(-) A-I      intronic
chr3:56307374(-) A-I      intronic
chr3:56307438(-) A-I      intronic
chr3:56029176(-) A-I      intronic
chr3:55548271(-) A-I      intronic
chr3:55690405(-) A-I      intronic
chr3:55569818(-) A-I      intronic
chr3:56032036(-) A-I      intronic
chr3:55863799(-) A-I      intronic
chr3:55628648(-) A-I      intronic
chr3:56304898(-) A-I      intronic
chr3:56461427(-) A-I      intronic
chr3:55587161(-) A-I      intronic
chr3:55686639(-) A-I      intronic
chr3:55548303(-) A-I      intronic
chr3:55628708(-) A-I      intronic
chr3:55840095(-) A-I      intronic
chr3:55925745(-) A-I      intronic
chr3:55686717(-) A-I      intronic
chr3:55925612(-) A-I      intronic
chr3:55635853(-) A-I      intronic
chr3:55706250(-) A-I      intronic
chr3:55603957(-) A-I      intronic
chr3:55605034(-) A-I      intronic
chr3:56440163(-) A-I      intronic
chr3:55587232(-) A-I      intronic
chr3:55587304(-) A-I      intronic
chr3:56300751(-) A-I      intronic
chr3:55604167(-) A-I      intronic
chr3:55675539(-) A-I      intronic
chr3:55573559(-) A-I      intronic
chr3:55685022(-) A-I      intronic
chr3:55547851(-) A-I      intronic
chr3:55676581(-) A-I      intronic
chr3:55676446(-) A-I      intronic
chr3:55809356(-) A-I      intronic
chr3:55587745(-) A-I      intronic
chr3:56032049(-) A-I      intronic
chr3:55690404(-) A-I      intronic
chr3:56238622(-) A-I      intronic
chr3:55610136(-) A-I      intronic
chr3:56307543(-) A-I      intronic
chr3:55610190(-) A-I      intronic
chr3:55740503(-) A-I      intronic
chr3:55780494(-) A-I      intronic
chr3:55863832(-) A-I      intronic
chr3:55547674(-) A-I      intronic
chr3:56454345(-) A-I      intronic
chr3:56029106(-) A-I      intronic
chr3:55684980(-) A-I      intronic
chr3:55863047(-) A-I      intronic
chr3:55623150(-) A-I      intronic
chr3:55637668(-) A-I      intronic
chr3:55547800(-) A-I      intronic
chr3:55573446(-) A-I      intronic
chr3:55676491(-) A-I      intronic
chr3:55549431(-) A-I      intronic
chr3:56304901(-) A-I      intronic
chr3:55623156(-) A-I      intronic
chr3:56013935(-) A-I      intronic
chr3:56460933(-) A-I      intronic
chr3:55573589(-) A-I      intronic
chr3:56031992(-) A-I      intronic
chr3:55628779(-) A-I      intronic
chr3:56326355(-) A-I      intronic
chr3:55925723(-) A-I      intronic
chr3:56029274(-) A-I      intronic
chr3:55684971(-) A-I      intronic
chr3:55686805(-) A-I      intronic
chr3:55587699(-) A-I      intronic
chr3:55740521(-) A-I      intronic
chr3:55547862(-) A-I      intronic
chr3:56305008(-) A-I      intronic
chr3:56169077(-) A-I      intronic
chr3:55548456(-) A-I      intronic
chr3:56032065(-) A-I      intronic
chr3:56032066(-) A-I      intronic
chr3:56427310(-) A-I      intronic
chr3:56299908(-) A-I      intronic
chr3:55684958(-) A-I      intronic
chr3:56300004(-) A-I      intronic
chr3:55925571(-) A-I      intronic
chr3:55939147(-) A-I      intronic
chr3:56307402(-) A-I      intronic
chr3:56389475(-) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase ERC2
chr3:55544907-55544908(-) m6A 3'UTR//exon       22608085
chr3:55544946-55544947(-) m6A 3'UTR//exon       22608085
chr3:55544966-55544967(-) m6A 3'UTR//exon       22608085
chr3:55545192-55545193(-) m6A 3'UTR//exon       22608085
chr3:56026092-56026093(-) m6A CDS       24981863//22608085
chr3:56026108-56026109(-) m6A CDS       24981863//22608085
chr3:56026159-56026160(-) m6A CDS       24981863
chr3:56026221-56026222(-) m6A CDS       24981863
chr3:56026231-56026232(-) m6A CDS       24981863
chr3:56026246-56026247(-) m6A CDS       24981863
chr3:56044590-56044591(-) m6A CDS       22608085
chr3:56053000-56053001(-) m6A CDS       22608085
chr3:56053024-56053025(-) m6A CDS       22608085
chr3:56053041-56053042(-) m6A CDS       22608085
chr3:56053051-56053052(-) m6A CDS       22608085
chr3:56114921-56114922(-) m6A CDS       22608085
chr3:56330199-56330200(-) m6A CDS       22608085
chr3:56330235-56330236(-) m6A CDS       22608085
chr3:56330273-56330274(-) m6A CDS       24981863//22608085
chr3:56330335-56330336(-) m6A CDS       24981863//22608085
chr3:56330410-56330411(-) m6A CDS       22608085
chr3:56330420-56330421(-) m6A CDS       25456834//22608085
chr3:56468485-56468486(-) m6A CDS//exon       24209618//25456834//24981863//27773535//22608085
chr3:56468496-56468497(-) m6A CDS//exon       24209618//25456834//24981863//27773535//22608085
chr3:56468520-56468521(-) m6A CDS//exon       24209618//25456834//24981863//27773535//22608085
chr3:56468529-56468530(-) m6A CDS//exon       24209618//25456834//24981863//27773535//22608085
chr3:56468567-56468568(-) m6A CDS//exon       24209618//25456834//24981863//27773535//22608085
chr3:56468604-56468605(-) m6A CDS//exon       24209618//25456834//24981863//27773535//22608085
chr3:56468711-56468712(-) m6A CDS//exon       24209618//25456834//24981863//27773535//22608085
chr3:56468855-56468856(-) m6A CDS//exon       24209618//25456834//24981863//27773535//22608085
chr3:56468908-56468909(-) m6A CDS//exon       24209618//25456834//24981863//27773535//22608085
chr3:56468917-56468918(-) m6A CDS//exon       24209618//25456834//24981863//27773535//22608085
chr3:56468941-56468942(-) m6A CDS//exon       24209618//25456834//24981863//27773535//22608085
chr3:56469016-56469017(-) m6A CDS//exon       27773535//22608085
chr3:56469090-56469091(-) m6A 5'UTR//exon       24981863//27773535//22608085
chr3:56469114-56469115(-) m6A 5'UTR//exon       24981863//22608085
chr3:56469144-56469145(-) m6A 5'UTR//exon       24981863//22608085
chr3:56501108-56501109(-) m6A exon//intron       24981863//22608085
chr3:56501123-56501124(-) m6A exon//intron       24981863//22608085
chr3:56501138-56501139(-) m6A exon//intron       22608085

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate ERC2
Exosome Blood     -

Interaction Network (The top 100 interactions):


Interactor1: kshv-miR-K12-2-3p
Interactor2: ERC2

Evidence Support:


Prediction-Evidence miRanda//Targetscan
Support Database VmiReg

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