Detail Information

Basic Information:


  VIRBase ID:  

VHID00487868

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-2-3p:           GCFC2:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol kshv-miR-K12-2-3p GCFC2
miRBase
Accession/Entrez ID		 MIMAT0015215 6936
Organism Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV) Homo sapiens
Category miRNA mRNA
Alias - C2orf3//DNABF//GCF//TCF9

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR GCFC2
chr2:75912626(-) A-I      intronic
chr2:75912695(-) A-I      intronic
chr2:75912721(-) A-I      intronic
chr2:75914664(-) A-I      intronic
chr2:75912736(-) A-I      intronic
chr2:75912649(-) A-I      intronic
chr2:75912746(-) A-I      intronic
chr2:75914225(-) A-I      intronic
chr2:75927197(-) A-I      intronic
chr2:75912676(-) A-I      intronic
chr2:75927203(-) A-I      intronic
chr2:75912644(-) A-I      intronic
chr2:75914637(-) A-I      intronic
chr2:75914645(-) A-I      intronic
chr2:75912641(-) A-I      intronic
chr2:75912640(-) A-I      intronic
chr2:75914648(-) A-I      intronic
chr2:75927222(-) A-I      intronic
chr2:75914193(-) A-I      intronic
chr2:75931962(-) A-I      intronic
chr2:75912667(-) A-I      intronic
chr2:75912618(-) A-I      intronic
chr2:75912657(-) A-I      intronic
chr2:75914198(-) A-I      intronic
chr2:75912639(-) A-I      intronic
chr2:75912622(-) A-I      intronic
chr2:75914212(-) A-I      intronic
chr2:75914656(-) A-I      intronic
chr2:75914209(-) A-I      intronic
chr2:75913663(-) A-I      intronic
chr2:75913665(-) A-I      intronic
chr2:75926105(-) A-I      intronic
chr2:75926755(-) A-I      intronic
chr2:75926840(-) A-I      intronic
chr2:75926842(-) A-I      intronic
chr2:75926916(-) A-I      intronic
chr2:75926921(-) A-I      intronic
chr2:75931916(-) A-I      intronic
chr2:75931969(-) A-I      intronic
chr2:75932004(-) A-I      intronic
chr2:75932556(-) A-I      intronic
chr2:75932667(-) A-I      intronic
chr2:75932697(-) A-I      intronic
chr2:75932741(-) A-I      intronic
chr2:75927173(-) A-I      intronic
chr2:75926094(-) A-I      intronic
chr2:75913470(-) A-I      intronic
chr2:75913483(-) A-I      intronic
chr2:75913634(-) A-I      intronic
chr2:75913650(-) A-I      intronic
chr2:75913676(-) A-I      intronic
chr2:75913696(-) A-I      intronic
chr2:75925902(-) A-I      intronic
chr2:75926019(-) A-I      intronic
chr2:75926055(-) A-I      intronic
chr2:75926075(-) A-I      intronic
chr2:75932005(-) A-I      intronic
chr2:75925887(-) A-I      intronic
chr2:75926946(-) A-I      intronic
chr2:75927206(-) A-I      intronic
chr2:75931908(-) A-I      intronic
chr2:75913671(-) A-I      intronic
chr2:75927204(-) A-I      intronic
chr2:75927141(-) A-I      intronic
chr2:75926902(-) A-I      intronic
chr2:75913421(-) A-I      intronic
chr2:75913754(-) A-I      intronic
chr2:75931979(-) A-I      intronic
chr2:75927095(-) A-I      intronic
chr2:75914321(-) A-I      intronic
chr2:75932585(-) A-I      intronic
chr2:75932006(-) A-I      intronic
chr2:75931978(-) A-I      intronic
chr2:75913722(-) A-I      intronic
chr2:75932034(-) A-I      intronic
chr2:75926880(-) A-I      intronic
chr2:75931921(-) A-I      intronic
chr2:75927110(-) A-I      intronic
chr2:75926062(-) A-I      intronic
chr2:75926102(-) A-I      intronic
chr2:75932729(-) A-I      intronic
chr2:75931984(-) A-I      intronic
chr2:75913440(-) A-I      intronic
chr2:75925895(-) A-I      intronic
chr2:75932601(-) A-I      intronic
chr2:75926794(-) A-I      intronic
chr2:75927142(-) A-I      intronic
chr2:75926038(-) A-I      intronic
chr2:75931919(-) A-I      intronic
chr2:75904955(-) A-I      intronic
chr2:75925917(-) A-I      intronic
chr2:75925972(-) A-I      intronic
chr2:75926016(-) A-I      intronic
chr2:75927165(-) A-I      intronic
chr2:75932014(-) A-I      intronic
chr2:75926130(-) A-I      intronic
chr2:75925975(-) A-I      intronic
chr2:75926940(-) A-I      intronic
chr2:75927245(-) A-I      intronic
chr2:75925926(-) A-I      intronic
chr2:75913864(-) A-I      intronic
chr2:75925980(-) A-I      intronic
chr2:75925921(-) A-I      intronic
chr2:75926026(-) A-I      intronic
chr2:75926885(-) A-I      intronic
chr2:75931977(-) A-I      intronic
chr2:75932696(-) A-I      intronic
chr2:75913751(-) A-I      intronic
chr2:75931995(-) A-I      intronic
chr2:75932555(-) A-I      intronic
chr2:75932560(-) A-I      intronic
chr2:75927226(-) A-I      intronic
chr2:75932680(-) A-I      intronic
chr2:75931844(-) A-I      intronic
chr2:75931966(-) A-I      intronic
chr2:75913625(-) A-I      intronic
chr2:75926741(-) A-I      intronic
chr2:75913787(-) A-I      intronic
chr2:75926982(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED GCFC2
chr2:75890776(-) A-I exon 3'UTR    22327324
chr2:75895329(-) A-I intron -    22327324
chr2:75912733(-) A-I intron -    22327324
chr2:75931846(-) A-I intron -    22327324
chr2:75931977(-) A-I intron -    22327324
chr2:75931978(-) A-I intron -    22327324
chr2:75912715(-) A-G intron -    22484847
chr2:75913671(-) A-G intron -    22484847
chr2:75913754(-) A-G intron -    22484847
chr2:75913788(-) A-G intron -    22484847
chr2:75914321(-) A-G intron -    22484847
chr2:75925895(-) A-G intron -    22484847
chr2:75925917(-) A-G intron -    22484847
chr2:75925921(-) A-G intron -    22484847
chr2:75925926(-) A-G intron -    22484847
chr2:75925955(-) A-G intron -    22484847
chr2:75925972(-) A-G intron -    22484847
chr2:75925975(-) A-G intron -    22484847
chr2:75926016(-) A-G intron -    22484847
chr2:75926038(-) A-G intron -    22484847
chr2:75926052(-) A-G intron -    22484847
chr2:75926062(-) A-G intron -    22484847
chr2:75926102(-) A-G intron -    22484847
chr2:75926881(-) A-G intron -    22484847
chr2:75926882(-) A-G intron -    22484847
chr2:75926885(-) A-G intron -    22484847
chr2:75926982(-) A-G intron -    22484847
chr2:75927141(-) A-G intron -    22484847
chr2:75927142(-) A-G intron -    22484847
chr2:75931841(-) A-G intron -    22484847
chr2:75931844(-) A-G intron -    22484847
chr2:75931846(-) A-G intron -    22484847
chr2:75931907(-) A-G intron -    22484847
chr2:75931908(-) A-G intron -    22484847
chr2:75931919(-) A-G intron -    22484847
chr2:75931920(-) A-G intron -    22484847
chr2:75931921(-) A-G intron -    22484847
chr2:75931977(-) A-G intron -    22484847
chr2:75931978(-) A-G intron -    22484847
chr2:75931979(-) A-G intron -    22484847
chr2:75931980(-) A-G intron -    22484847
chr2:75931981(-) A-G intron -    22484847
chr2:75931984(-) A-G intron -    22484847
chr2:75932005(-) A-G intron -    22484847
chr2:75932555(-) A-G intron -    22484847
chr2:75932560(-) A-G intron -    22484847
chr2:75932582(-) A-G intron -    22484847
chr2:75932680(-) A-G intron -    22484847
chr2:75932696(-) A-G intron -    22484847
chr2:75932729(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase GCFC2
chr2:75889837-75889838(-) m6A 3'UTR//exon//intron       27773535
chr2:75889849-75889850(-) m6A 3'UTR//exon//intron       27773535
chr2:75889885-75889886(-) m6A 3'UTR//exon//intron       27773535
chr2:75890016-75890017(-) m6A 3'UTR//exon//intron       27773535
chr2:75890100-75890101(-) m6A 3'UTR//exon//intron       27773535
chr2:75907357-75907358(-) m6A 3'UTR//CDS//exon//intron       27773535
chr2:75907398-75907399(-) m6A 3'UTR//CDS//exon//intron       27773535
chr2:75914973-75914974(-) m6A 3'UTR//CDS//exon       27773535
chr2:75921460-75921461(-) m6A 3'UTR//CDS//exon       27773535
chr2:75921533-75921534(-) m6A 3'UTR//CDS//exon       27773535
chr2:75921577-75921578(-) m6A exon//intron       27773535
chr2:75923433-75923434(-) m6A 3'UTR//CDS//exon//intron       24981863//27773535
chr2:75928351-75928352(-) m6A 3'UTR//CDS//exon       24981863//27773535
chr2:75928395-75928396(-) m6A 3'UTR//CDS//exon       24981863//27773535
chr2:75929346-75929347(-) m6A 3'UTR//CDS//intron       24981863//27773535
chr2:75929354-75929355(-) m6A 3'UTR//CDS//intron       24981863//27773535
chr2:75929361-75929362(-) m6A 3'UTR//CDS//intron       24981863//27773535
chr2:75933661-75933662(-) m6A 3'UTR//CDS       27773535
chr2:75933768-75933769(-) m6A 3'UTR//CDS       27773536
chr2:75937581-75937582(-) m6A 3'UTR//intron       27773536
chr2:75937813-75937814(-) m6A CDS       25456834//27371828//27773536
chr2:75937879-75937880(-) m6A CDS       25456834//24981863//27371828//27773536//22608085
chr2:75937959-75937960(-) m6A CDS       25456834//24981863//27371828//27773536//22608085

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate GCFC2
Chromatin K562 cells     -
Cytoplasm Nasopharyngeal carcinoma cells     20498841
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol HCC cell line (HepG2)|K562 cells     -
Exosome Blood     -
Membrane HCC cell line (HepG2)|K562 cells     -
Nucleoplasm K562 cells     -
Nucleus Nasopharyngeal carcinoma cells     20498841
Nucleus HCC cell line (HepG2)     -

Interaction Network (The top 100 interactions):


Interactor1: kshv-miR-K12-2-3p
Interactor2: GCFC2

Evidence Support:


Prediction-Evidence miRanda//Targetscan
Support Database VmiReg

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