Detail Information

Basic Information:


  VIRBase ID:  

VHID00487856

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-2-3p:           SURF4:      

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Interactor Information:


Interactor1 Interactor2
Symbol kshv-miR-K12-2-3p SURF4
miRBase
Accession/Entrez ID		 MIMAT0015215 6836
Organism Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV) Homo sapiens
Category miRNA mRNA
Alias - ERV29

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR SURF4
chr9:136229100(-) A-I      3'UTR
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED SURF4
chr9:136229572(-) A-I exon 3'UTR    19478186

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase SURF4
chr9:136228475-136228476(-) m6A 3'UTR       24284625
chr9:136228643-136228644(-) m6A 3'UTR       26404942//22575960
chr9:136228690-136228691(-) Y 3'UTR       26075521
chr9:136229356-136229357(-) m6A 3'UTR       24284625//25456834//27773535//27773536//22575960
chr9:136229463-136229464(-) m6A 3'UTR       24284625//25456834//24981863//26404942//27773535//27773536//22575960
chr9:136229471-136229472(-) m6A 3'UTR       24284625//25456834//24981863//26404942//27773535//27773536//22575960
chr9:136229534-136229535(-) m6A 3'UTR       24284625//25456834//24981863//26404942//27773535//27773536//22575960
chr9:136229593-136229594(-) m6A 3'UTR       24284625//26404942//27773536//22575960
chr9:136230059-136230060(-) Y 3'UTR       26075521
chr9:136230102-136230103(-) m6A 3'UTR       24284625//24209618//26404942//27773535//22575960
chr9:136230216-136230217(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr9:136230231-136230232(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr9:136230295-136230296(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr9:136230320-136230321(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr9:136230337-136230338(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr9:136230454-136230455(-) m6A 3'UTR//CDS//exon//intron       24284625//24209618//24981863//26404942//27773535//22575960//22608085
chr9:136230508-136230509(-) m6A 3'UTR//CDS//exon//intron       24284625//24209618//24981863//26404942//27773535//22575960//22608085
chr9:136230577-136230578(-) m6A 3'UTR//CDS//exon//intron       24284625//24209618//24981863//27773535
chr9:136230624-136230625(-) m6A CDS//exon//intron       24284625//24981863//27773535
chr9:136231796-136231797(-) m6A CDS//exon//intron       27773535
chr9:136231899-136231900(-) m6A CDS//exon//intron       27773535
chr9:136232878-136232879(-) m6A CDS//exon       27773535
chr9:136232934-136232935(-) m6A exon//intron       27773535
chr9:136233523-136233524(-) m6A CDS//exon//intron       27773535//27773536
chr9:136234141-136234142(-) m6A CDS//exon       27773535//27773536
chr9:136234190-136234191(-) m6A CDS//exon       24284625//27371828//27773536
chr9:136242805-136242806(-) m6A 5'UTR//CDS//exon       24981863//27371828//27773536//22575960

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate SURF4
Chromatin K562 cells     -
Cytosol HCC cell line (HepG2)     -
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)|HeLa-S3 cells     -
Ribosome HEK-293 cells     22199352
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: kshv-miR-K12-2-3p
Interactor2: SURF4

Evidence Support:


Prediction-Evidence miRanda//Targetscan
Support Database VmiReg

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