Basic Information:

  VIRBase ID:  

VHID00487375

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-2-3p:  MIMAT0015215          ETS1:  NM_001162422     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	kshv-miR-K12-2-3p	ETS1
miRBase Accession/Entrez ID	MIMAT0015215	2113
Organism	Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	c-ets-1//ETS-1//EWSR2//p54

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	ETS1	chr11:128440225(-) A-I      intronic chr11:128440222(-) A-I      intronic chr11:128440199(-) A-I      intronic chr11:128440298(-) A-I      intronic chr11:128440282(-) A-I      intronic chr11:128440270(-) A-I      intronic chr11:128440261(-) A-I      intronic chr11:128440257(-) A-I      intronic chr11:128440238(-) A-I      intronic chr11:128440230(-) A-I      intronic chr11:128437722(-) A-I      intronic chr11:128437761(-) A-I      intronic chr11:128437747(-) A-I      intronic chr11:128440418(-) A-I      intronic chr11:128437725(-) A-I      intronic chr11:128440409(-) A-I      intronic chr11:128437756(-) A-I      intronic chr11:128440416(-) A-I      intronic chr11:128437753(-) A-I      intronic chr11:128437665(-) A-I      intronic chr11:128437692(-) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	ETS1	chr11:128354716(-) T-C intron -    21725310

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	ETS1	chr11:128331249-128331250(-) Gm 3'UTR       - chr11:128331468-128331469(-) m6A 3'UTR       26404942 chr11:128331483-128331484(-) m6A 3'UTR       26404942 chr11:128331539-128331540(-) m6A 3'UTR       26404942//27773535 chr11:128331552-128331553(-) m6A 3'UTR       26404942//27773535 chr11:128331704-128331705(-) m6A 3'UTR       24284625//24981863//26404942//27773535 chr11:128331726-128331727(-) m6A 3'UTR       24284625//24981863//28052920//26404942//27773535 chr11:128331764-128331765(-) m6A 3'UTR       24284625//24981863//28052920//26404942//27773535 chr11:128331800-128331801(-) m6A 3'UTR       24981863//26404942//27773535 chr11:128331871-128331872(-) m6A 3'UTR       24209618//24981863//26404942//27773535 chr11:128331880-128331881(-) m6A 3'UTR       24209618//24981863//26404942//27773535 chr11:128331911-128331912(-) m6A 3'UTR       24209618//24981863//26404942//27773535 chr11:128331968-128331969(-) m6A 3'UTR       24209618//24981863//28052920//26404942//27773535//27371828 chr11:128332051-128332052(-) m6A 3'UTR       24209618//24981863//28052920//26404942//27773535//27371828 chr11:128332069-128332070(-) m6A 3'UTR       24209618//24981863//28052920//26404942//27773535//27371828 chr11:128332151-128332152(-) m6A 3'UTR       24284625//24209618//24981863//26404942//27773535//27371828 chr11:128332193-128332194(-) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//27371828 chr11:128332210-128332211(-) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//27371828 chr11:128332221-128332222(-) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27371828//22575960 chr11:128332232-128332233(-) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27371828//22575960 chr11:128332368-128332369(-) m6A 3'UTR//CDS       24284625//24209618//24981863//28052920//26404942//27773535//27371828 chr11:128332382-128332383(-) m6A 3'UTR//CDS       24284625//24209618//24981863//28052920//26404942//27773535//27371828 chr11:128332417-128332418(-) m6A 3'UTR//CDS       24284625//24209618//24981863//28052920//26404942//27773535 chr11:128332442-128332443(-) m6A CDS//exon       24284625//24209618//24981863//28052920//26404942//27773535 chr11:128333421-128333422(-) m6A CDS//exon//intron       24284625//24209618//24981863//27773535 chr11:128333444-128333445(-) m6A CDS//exon//intron       24284625//24209618//24981863//27773535 chr11:128350126-128350127(-) m6A CDS//intron       24284625//26404942 chr11:128350147-128350148(-) m6A CDS//intron       24284625//26404942 chr11:128350159-128350160(-) m6A CDS//intron       24284625//26404942 chr11:128350207-128350208(-) m6A CDS//intron       24284625//26404942 chr11:128354726-128354727(-) m6A CDS//intron       27773535 chr11:128354746-128354747(-) m6A CDS//intron       27773535 chr11:128354766-128354767(-) m6A CDS//intron       27773535 chr11:128354801-128354802(-) m6A CDS//intron       27773535 chr11:128354812-128354813(-) m6A CDS//intron       27773535 chr11:128391926-128391927(-) m6A 5'UTR//intron       24284625//24209618//28052920//26404942//27371828 chr11:128391942-128391943(-) m6A 5'UTR//intron       24284625//24209618//28052920//26404942//27371828 chr11:128392111-128392112(-) m6A 5'UTR//intron       24209618//25456834//24981863//27371828

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	ETS1	Exosome Blood     -

Interaction Network (The top 100 interactions):

Interactor1: kshv-miR-K12-2-3p
Interactor2: ETS1

Evidence Support:

Prediction-Evidence	miRanda//Targetscan
Support Database	VmiReg