Basic Information:

  VIRBase ID:  

VHID00486968

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-1-3p:  MIMAT0015214          PRSS53:  NM_001039503     

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Interactor Information:

	Interactor1	Interactor2
Symbol	kshv-miR-K12-1-3p	PRSS53
miRBase Accession/Entrez ID	MIMAT0015214	339105
Organism	Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	POL3S//UNQ308

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	PRSS53	chr16:31098483(-) A-I      ncRNA chr16:31098929(-) A-I      Syn:Gln->Gln chr16:31100940(-) A-I      ncRNA chr16:31100939(-) A-I      ncRNA chr16:31100927(-) A-I      ncRNA

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	PRSS53	chr16:31098531(-) A-T intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	PRSS53	chr16:31094918-31094919(-) m6A 3'UTR//exon       24284625//24981863//27773535//27371828 chr16:31094934-31094935(-) m6A 3'UTR//exon       24284625//24981863//27773535//27371828 chr16:31094975-31094976(-) m6A 3'UTR//exon       24284625//24981863//27773535//27371828//22575960//22608085 chr16:31095086-31095087(-) m6A 3'UTR//exon       25456834//24981863//27371828//22575960 chr16:31095103-31095104(-) m6A 3'UTR//exon       25456834//24981863//27371828//22575960 chr16:31095158-31095159(-) m6A exon//intron       25456834//24981863//27371828 chr16:31095179-31095180(-) m6A exon//intron       25456834//27371828 chr16:31095219-31095220(-) m6A exon//intron       27371828 chr16:31095320-31095321(-) m6A exon//intron       27371828 chr16:31095395-31095396(-) m6A exon//intron       24284625//24981863//27371828 chr16:31095411-31095412(-) m6A exon//intron       24284625//24981863//27371828 chr16:31095482-31095483(-) m6A CDS//exon       24284625//25456834//24981863//27371828 chr16:31095507-31095508(-) m6A CDS//exon       24284625//25456834//24981863//27371828//27773536 chr16:31095525-31095526(-) m6A CDS//exon       25456834//27371828//27773536 chr16:31095738-31095739(-) m6A exon//intron       24284625//27773535 chr16:31095767-31095768(-) m6A exon//intron       24284625//27773535 chr16:31095785-31095786(-) m6A exon//intron       24284625//27773535 chr16:31095807-31095808(-) m6A exon//intron       24284625//27773535 chr16:31096302-31096303(-) m6A CDS//exon       24284625 chr16:31096307-31096308(-) m6A CDS//exon       24284625 chr16:31096498-31096499(-) m6A CDS//exon       27773536 chr16:31097574-31097575(-) m6A exon//intron       27371828 chr16:31097586-31097587(-) m6A exon//intron       27371828 chr16:31097595-31097596(-) m6A exon//intron       27371828 chr16:31099012-31099013(-) m6A CDS//exon       24284625

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	PRSS53	Chromatin K562 cells     - Exosome Blood     - Nucleus HCC cell line (HepG2)     -

Interaction Network (The top 100 interactions):

Interactor1: kshv-miR-K12-1-3p
Interactor2: PRSS53

Evidence Support:

Prediction-Evidence	miRanda//RNAHybrid
Support Database	VmiReg