Basic Information:

  VIRBase ID:  

VHID00486592

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-1-3p:  MIMAT0015214          FAM210A:  NM_152352     

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Interactor Information:

	Interactor1	Interactor2
Symbol	kshv-miR-K12-1-3p	FAM210A
miRBase Accession/Entrez ID	MIMAT0015214	125228
Organism	Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	C18orf19//HsT2329

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	FAM210A	chr18:13710362(-) A-I      intronic chr18:13724825(-) A-I      intronic chr18:13678453(-) A-I      intronic chr18:13724910(-) A-I      intronic chr18:13711213(-) A-I      intronic chr18:13710441(-) A-I      intronic chr18:13710425(-) A-I      intronic chr18:13710279(-) A-I      intronic chr18:13665205(-) A-I      3'UTR chr18:13665199(-) A-I      3'UTR chr18:13711262(-) A-I      intronic chr18:13710294(-) A-I      intronic chr18:13665216(-) A-I      3'UTR chr18:13710280(-) A-I      intronic chr18:13672476(-) A-I      intronic chr18:13698268(-) A-I      intronic chr18:13699008(-) A-I      intronic chr18:13711207(-) A-I      intronic chr18:13710347(-) A-I      intronic chr18:13684372(-) A-I      intronic chr18:13670959(-) A-I      intronic chr18:13678407(-) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	FAM210A	chr18:13663468-13663469(-) m6A 3'UTR       27773535 chr18:13663500-13663501(-) m6A 3'UTR       27773535 chr18:13663528-13663529(-) m6A 3'UTR       27773535 chr18:13663611-13663612(-) m6A 3'UTR       27773535 chr18:13666283-13666284(-) m6A 3'UTR//exon       27773535 chr18:13666427-13666428(-) m6A 3'UTR//exon       24981863//27773535//22608085 chr18:13666516-13666517(-) m6A 3'UTR//CDS//exon       24284625//24981863//28052920//27773535//27371828//22608085 chr18:13666538-13666539(-) m6A 3'UTR//CDS//exon       24284625//24981863//28052920//27773535//27371828//22608085 chr18:13666549-13666550(-) m6A 3'UTR//CDS//exon       24284625//24981863//28052920//27773535//27371828//22608085 chr18:13666582-13666583(-) m6A 3'UTR//CDS//exon       24284625//24981863//27773535//27371828//22608085 chr18:13666596-13666597(-) m6A 3'UTR//CDS//exon       24981863//27773535//27371828//22608085 chr18:13666672-13666673(-) m6A 3'UTR//CDS//exon       24981863//27773535//27371828 chr18:13681683-13681684(-) m6A CDS//exon//intron       24981863 chr18:13681691-13681692(-) m6A CDS//exon//intron       24981863 chr18:13681726-13681727(-) m6A CDS//exon//intron       24981863//27773535//22608085 chr18:13681763-13681764(-) m6A CDS//exon//intron       24981863//27773535//22608085 chr18:13681917-13681918(-) m6A CDS//exon//intron       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr18:13681974-13681975(-) m6A CDS//exon//intron       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr18:13681995-13681996(-) m6A CDS//exon//intron       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr18:13682019-13682020(-) m6A CDS//exon//intron       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr18:13682030-13682031(-) m6A CDS//exon//intron       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr18:13682054-13682055(-) m6A CDS//exon//intron       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr18:13682095-13682096(-) m6A 5'UTR//exon//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085 chr18:13687761-13687762(-) m6A 5'UTR//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085 chr18:13687788-13687789(-) m6A 5'UTR//intron       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085 chr18:13687840-13687841(-) m6A 5'UTR//intron       24209618//27371828 chr18:13726437-13726438(-) m6A 5'UTR//exon       24284625//24209618//24981863//27371828//27773536//22575960 chr18:13726589-13726590(-) m6A 5'UTR//exon       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	FAM210A	Chromatin K562 cells     - Cytoplasm Nasopharyngeal carcinoma cells     20498841 Cytoplasm Nasopharyngeal carcinoma cells     20498841 Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Cytosol K562 cells     - Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus Nasopharyngeal carcinoma cells     20498841 Nucleus Nasopharyngeal carcinoma cells     20498841 Nucleus HeLa-S3 cells     -

Interaction Network (The top 100 interactions):

Interactor1: kshv-miR-K12-1-3p
Interactor2: FAM210A

Evidence Support:

Prediction-Evidence	miRanda//Targetscan
Support Database	VmiReg