Basic Information:

  VIRBase ID:  

VHID00486538

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-1-3p:  MIMAT0015214          STK11IP:  NM_052902     

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Interactor Information:

	Interactor1	Interactor2
Symbol	kshv-miR-K12-1-3p	STK11IP
miRBase Accession/Entrez ID	MIMAT0015214	114790
Organism	Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	LIP1//LKB1IP//STK11IP1

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	STK11IP	chr2:220462627-220462628(+) m6A 5'UTR//exon       24981863 chr2:220462860-220462861(+) m6A CDS//exon       24284625//24981863 chr2:220462934-220462935(+) m6A exon//intron       24981863 chr2:220462968-220462969(+) m6A exon//intron       24981863 chr2:220466063-220466064(+) m6A CDS//exon       24284625 chr2:220466147-220466148(+) m6A CDS//exon       24284625 chr2:220472873-220472874(+) m6A CDS//exon       24209618 chr2:220472952-220472953(+) m6A CDS//exon       24284625//24209618//25456834//24981863//27371828 chr2:220473090-220473091(+) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//27773536 chr2:220473122-220473123(+) m1A CDS//exon       26863196 chr2:220473134-220473135(+) m6A CDS//exon       24209618//25456834//24981863//27773536//22608085 chr2:220473308-220473309(+) m6A CDS//exon       24209618//25456834//24981863//27773536//22608085 chr2:220473410-220473411(+) m6A CDS//exon       25456834 chr2:220480845-220480846(+) m6A CDS//exon       - chr2:220480872-220480873(+) m6A CDS//exon       - chr2:220480879-220480880(+) m6A CDS//exon       - chr2:220480961-220480962(+) m6A 3'UTR       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	STK11IP	Chromatin K562 cells     - Cytosol HCC cell line (HepG2)     - Exosome Blood     - Nucleoplasm K562 cells     - Nucleus K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: kshv-miR-K12-1-3p
Interactor2: STK11IP

Evidence Support:

Prediction-Evidence	miRanda//Targetscan
Support Database	VmiReg