Basic Information:

  VIRBase ID:  

VHID00486402

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.6040

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-1-3p:  MIMAT0015214          TMEM25:  NM_032780     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	kshv-miR-K12-1-3p	TMEM25
miRBase Accession/Entrez ID	MIMAT0015214	84866
Organism	Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	-

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	TMEM25	chr11:118408612(+) A-I      intronic chr11:118409567(+) A-I      intronic chr11:118409559(+) A-I      intronic chr11:118409449(+) A-I      intronic chr11:118409535(+) A-I      intronic chr11:118409458(+) A-I      intronic chr11:118413485(+) A-I      intronic chr11:118409477(+) A-I      intronic chr11:118409432(+) A-I      intronic chr11:118409448(+) A-I      intronic chr11:118407891(+) A-I      intronic chr11:118409510(+) A-I      intronic chr11:118409514(+) A-I      intronic chr11:118413478(+) A-I      intronic chr11:118413475(+) A-I      intronic chr11:118413469(+) A-I      intronic chr11:118409529(+) A-I      intronic chr11:118407906(+) A-I      intronic chr11:118407917(+) A-I      intronic chr11:118408058(+) A-I      intronic chr11:118407905(+) A-I      intronic chr11:118409443(+) A-I      intronic chr11:118413468(+) A-I      intronic chr11:118408063(+) A-I      intronic chr11:118408559(+) A-I      intronic chr11:118413467(+) A-I      intronic chr11:118408588(+) A-I      intronic chr11:118410483(+) A-I      intronic chr11:118410464(+) A-I      intronic chr11:118410141(+) A-I      intronic chr11:118408675(+) A-I      intronic chr11:118409067(+) A-I      intronic chr11:118409081(+) A-I      intronic chr11:118409409(+) A-I      intronic chr11:118409430(+) A-I      intronic chr11:118411999(+) A-I      intronic chr11:118407800(+) A-I      intronic chr11:118409969(+) A-I      intronic chr11:118410905(+) A-I      intronic chr11:118408991(+) A-I      intronic chr11:118414303(+) A-I      intronic chr11:118414591(+) A-I      intronic chr11:118406854(+) A-I      intronic chr11:118410474(+) A-I      intronic chr11:118409446(+) A-I      intronic chr11:118409450(+) A-I      intronic chr11:118408021(+) A-I      intronic chr11:118410526(+) A-I      intronic chr11:118411994(+) A-I      intronic chr11:118408038(+) A-I      intronic chr11:118408043(+) A-I      intronic chr11:118409455(+) A-I      intronic chr11:118409461(+) A-I      intronic chr11:118409352(+) A-I      intronic chr11:118408076(+) A-I      intronic chr11:118409487(+) A-I      intronic chr11:118407870(+) A-I      intronic chr11:118410072(+) A-I      intronic chr11:118409379(+) A-I      intronic chr11:118408556(+) A-I      intronic chr11:118409497(+) A-I      intronic chr11:118409586(+) A-I      intronic chr11:118409620(+) A-I      intronic chr11:118409962(+) A-I      intronic chr11:118410000(+) A-I      intronic chr11:118408086(+) A-I      intronic chr11:118410080(+) A-I      intronic chr11:118408906(+) A-I      intronic chr11:118410092(+) A-I      intronic chr11:118406657(+) A-I      intronic chr11:118410124(+) A-I      intronic chr11:118410142(+) A-I      intronic chr11:118408565(+) A-I      intronic chr11:118408580(+) A-I      intronic chr11:118407629(+) A-I      intronic chr11:118410889(+) A-I      intronic chr11:118409004(+) A-I      intronic chr11:118410888(+) A-I      intronic chr11:118410691(+) A-I      intronic chr11:118408602(+) A-I      intronic chr11:118408672(+) A-I      intronic chr11:118410462(+) A-I      intronic chr11:118410656(+) A-I      intronic chr11:118410629(+) A-I      intronic chr11:118410472(+) A-I      intronic chr11:118410597(+) A-I      intronic chr11:118408720(+) A-I      intronic chr11:118410593(+) A-I      intronic chr11:118408926(+) A-I      intronic chr11:118410540(+) A-I      intronic chr11:118407801(+) A-I      intronic chr11:118408942(+) A-I      intronic chr11:118408956(+) A-I      intronic chr11:118406624(+) A-I      intronic chr11:118408767(+) A-I      intronic chr11:118406983(+) A-I      intronic chr11:118407909(+) A-I      intronic chr11:118407074(+) A-I      intronic chr11:118408078(+) A-I      intronic chr11:118407142(+) A-I      intronic chr11:118407160(+) A-I      intronic chr11:118407653(+) A-I      intronic chr11:118410586(+) A-I      intronic chr11:118407792(+) A-I      intronic chr11:118407857(+) A-I      intronic chr11:118407878(+) A-I      intronic chr11:118407879(+) A-I      intronic chr11:118407895(+) A-I      intronic chr11:118407941(+) A-I      intronic chr11:118407962(+) A-I      intronic chr11:118410575(+) A-I      intronic chr11:118409071(+) A-I      intronic chr11:118410550(+) A-I      intronic chr11:118407969(+) A-I      intronic chr11:118407997(+) A-I      intronic chr11:118408961(+) A-I      intronic chr11:118408973(+) A-I      intronic chr11:118409456(+) A-I      intronic chr11:118410571(+) A-I      intronic chr11:118414335(+) A-I      intronic chr11:118408006(+) A-I      intronic chr11:118407945(+) A-I      intronic chr11:118410565(+) A-I      intronic chr11:118409028(+) A-I      intronic chr11:118409424(+) A-I      intronic chr11:118417029(+) A-I      3'UTR chr11:118417027(+) A-I      3'UTR chr11:118416957(+) A-I      3'UTR chr11:118417131(+) A-I      3'UTR chr11:118417048(+) A-I      3'UTR chr11:118416958(+) A-I      3'UTR chr11:118417014(+) A-I      3'UTR chr11:118417126(+) A-I      3'UTR chr11:118416988(+) A-I      3'UTR chr11:118416949(+) A-I      3'UTR chr11:118417055(+) A-I      3'UTR chr11:118417042(+) A-I      3'UTR chr11:118407626(+) A-I      intronic chr11:118406855(+) A-I      intronic chr11:118408008(+) A-I      intronic chr11:118408504(+) A-I      intronic chr11:118409058(+) A-I      intronic chr11:118412622(+) A-I      intronic chr11:118407716(+) A-I      intronic chr11:118409562(+) A-I      intronic chr11:118406776(+) A-I      intronic chr11:118409156(+) A-I      intronic chr11:118408044(+) A-I      intronic chr11:118410657(+) A-I      intronic chr11:118410583(+) A-I      intronic chr11:118406767(+) A-I      intronic chr11:118408673(+) A-I      intronic chr11:118408582(+) A-I      intronic chr11:118407654(+) A-I      intronic chr11:118407885(+) A-I      intronic chr11:118408596(+) A-I      intronic chr11:118409591(+) A-I      intronic chr11:118407707(+) A-I      intronic chr11:118409595(+) A-I      intronic chr11:118407669(+) A-I      intronic chr11:118408686(+) A-I      intronic chr11:118409493(+) A-I      intronic chr11:118408645(+) A-I      intronic chr11:118408681(+) A-I      intronic chr11:118407823(+) A-I      intronic chr11:118410954(+) A-I      intronic chr11:118409026(+) A-I      intronic chr11:118407771(+) A-I      intronic chr11:118409144(+) A-I      intronic chr11:118409049(+) A-I      intronic chr11:118410161(+) A-I      intronic chr11:118407981(+) A-I      intronic chr11:118408691(+) A-I      intronic chr11:118408908(+) A-I      intronic chr11:118408606(+) A-I      intronic chr11:118408564(+) A-I      intronic chr11:118407659(+) A-I      intronic chr11:118408001(+) A-I      intronic chr11:118410848(+) A-I      intronic chr11:118407690(+) A-I      intronic chr11:118412585(+) A-I      intronic chr11:118410516(+) A-I      intronic chr11:118410942(+) A-I      intronic chr11:118409093(+) A-I      intronic chr11:118409532(+) A-I      intronic chr11:118407846(+) A-I      intronic chr11:118409142(+) A-I      intronic chr11:118408072(+) A-I      intronic chr11:118410589(+) A-I      intronic chr11:118408533(+) A-I      intronic chr11:118407988(+) A-I      intronic chr11:118408510(+) A-I      intronic chr11:118408655(+) A-I      intronic chr11:118408698(+) A-I      intronic chr11:118409086(+) A-I      intronic chr11:118409074(+) A-I      intronic chr11:118409947(+) A-I      intronic chr11:118409429(+) A-I      intronic chr11:118410155(+) A-I      intronic chr11:118408910(+) A-I      intronic chr11:118409452(+) A-I      intronic chr11:118406765(+) A-I      intronic chr11:118408605(+) A-I      intronic chr11:118410022(+) A-I      intronic chr11:118410501(+) A-I      intronic chr11:118406773(+) A-I      intronic chr11:118410481(+) A-I      intronic chr11:118409346(+) A-I      intronic chr11:118412030(+) A-I      intronic chr11:118410720(+) A-I      intronic chr11:118407640(+) A-I      intronic chr11:118409143(+) A-I      intronic chr11:118409488(+) A-I      intronic chr11:118408074(+) A-I      intronic chr11:118410480(+) A-I      intronic chr11:118408912(+) A-I      intronic chr11:118409469(+) A-I      intronic chr11:118408990(+) A-I      intronic chr11:118407922(+) A-I      intronic chr11:118408613(+) A-I      intronic chr11:118413864(+) A-I      intronic chr11:118408951(+) A-I      intronic chr11:118408616(+) A-I      intronic chr11:118409353(+) A-I      intronic chr11:118412056(+) A-I      intronic chr11:118406722(+) A-I      intronic chr11:118408610(+) A-I      intronic chr11:118408987(+) A-I      intronic chr11:118408619(+) A-I      intronic chr11:118413701(+) A-I      intronic chr11:118410615(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	TMEM25	chr11:118412750(+) T-C intron -    22484847 chr11:118413700(+) T-C intron -    22484847 chr11:118414381(+) T-C intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	TMEM25	chr11:118402085-118402086(+) m6A 5'UTR//exon//intron       25456834 chr11:118402108-118402109(+) m6A 5'UTR//exon//intron       25456834 chr11:118402899-118402900(+) m6A 3'UTR//CDS//exon//intron       - chr11:118403000-118403001(+) m6A 3'UTR//CDS//exon//intron       24284625 chr11:118403027-118403028(+) m6A 3'UTR//CDS//exon//intron       25456834 chr11:118403292-118403293(+) m6A exon//intron       24284625 chr11:118403361-118403362(+) m6A exon//intron       24284625

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	TMEM25	Exosome Blood     - Nucleoplasm K562 cells     - Nucleus Nasopharyngeal carcinoma cells     20498841

Interaction Network (The top 100 interactions):

Interactor1: kshv-miR-K12-1-3p
Interactor2: TMEM25

Evidence Support:

Weak-Evidence	PAR-CLIP
Prediction-Evidence	miRanda//PARalyzer//RNAHybrid//Targetscan
Support Database	ViRBase//VIRmiRNA//VmiReg

References:

PMID	22100165	Target region	3'UTR
Source	ViRBase//VIRmiRNA//VmiReg	Interactor1 expression	None
Tissue or cell line	BC-1 cells	Interactor2 expression	None
Description	Using PAR-CLIP, a technology which allows the direct and transcriptome-wide identification of miRNA targets, we delineate the target sites for all viral and cellular miRNAs expressed in PEL cell lines. The resulting data set revealed that KSHV miRNAs directly target more than 2000 cellular mRNAs, including many involved in pathways relevant to KSHV pathogenesis. Moreover, 58% of these mRNAs are also targeted by EBV miRNAs, via distinct binding sites.Clusters with seed matches to expressed miRNAs were considered candidate target sites. Of the clusters mapping to human 3'UTRs, 69% (BC-1) and 70% (BC-3) had seed matches to expressed miRNAs (Tables S6).Table S6A BC-1 derived 3'UTR clusters with seed matches to expressed miRNAs.