Basic Information:

  VIRBase ID:  

VHID00486347

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-1-3p:  MIMAT0015214          MED10:  NM_032286     

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Interactor Information:

	Interactor1	Interactor2
Symbol	kshv-miR-K12-1-3p	MED10
miRBase Accession/Entrez ID	MIMAT0015214	84246
Organism	Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	L6//NUT2//TRG20

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	MED10	chr5:6372463-6372464(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//27371828//27773536//22575960//22608085 chr5:6372507-6372508(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085 chr5:6372519-6372520(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085 chr5:6372556-6372557(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085 chr5:6372580-6372581(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr5:6372664-6372665(-) m6A CDS//exon       24284625//24209618//24981863//27773535//27371828//22575960//22608085 chr5:6372687-6372688(-) m6A CDS//exon       24284625//24209618//27773535//22608085 chr5:6378543-6378544(-) m6A CDS//exon       24284625//24981863//27371828

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	MED10	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: kshv-miR-K12-1-3p
Interactor2: MED10

Evidence Support:

Prediction-Evidence	miRanda//Targetscan
Support Database	VmiReg