Detail Information

Basic Information:


  VIRBase ID:  

VHID00484942

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-1-3p:           NMI:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol kshv-miR-K12-1-3p NMI
miRBase
Accession/Entrez ID		 MIMAT0015214 9111
Organism Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV) Homo sapiens
Category miRNA mRNA
Alias - -

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR NMI
chr2:152141980(-) A-I      intronic
chr2:152139804(-) A-I      intronic
chr2:152139777(-) A-I      intronic
chr2:152139760(-) A-I      intronic
chr2:152130652(-) A-I      intronic
chr2:152136683(-) A-I      intronic
chr2:152136670(-) A-I      intronic
chr2:152136129(-) A-I      intronic
chr2:152136102(-) A-I      intronic
chr2:152136088(-) A-I      intronic
chr2:152136063(-) A-I      intronic
chr2:152137625(-) A-I      intronic
chr2:152141098(-) A-I      intronic
chr2:152141006(-) A-I      intronic
chr2:152140704(-) A-I      intronic
chr2:152140667(-) A-I      intronic
chr2:152131716(-) A-I      intronic
chr2:152131593(-) A-I      intronic
chr2:152140611(-) A-I      intronic
chr2:152136593(-) A-I      intronic
chr2:152145593(-) A-I      intronic
chr2:152136067(-) A-I      intronic
chr2:152139740(-) A-I      intronic
chr2:152130639(-) A-I      intronic
chr2:152131673(-) A-I      intronic
chr2:152142020(-) A-I      intronic
chr2:152136123(-) A-I      intronic
chr2:152130709(-) A-I      intronic
chr2:152131674(-) A-I      intronic
chr2:152131588(-) A-I      intronic
chr2:152131549(-) A-I      intronic
chr2:152131497(-) A-I      intronic
chr2:152130762(-) A-I      intronic
chr2:152136155(-) A-I      intronic
chr2:152131101(-) A-I      intronic
chr2:152130231(-) A-I      intronic
chr2:152136675(-) A-I      intronic
chr2:152139948(-) A-I      intronic
chr2:152141986(-) A-I      intronic
chr2:152130700(-) A-I      intronic
chr2:152137519(-) A-I      intronic
chr2:152141990(-) A-I      intronic
chr2:152136626(-) A-I      intronic
chr2:152131087(-) A-I      intronic
chr2:152136053(-) A-I      intronic
chr2:152130148(-) A-I      intronic
chr2:152131679(-) A-I      intronic
chr2:152130677(-) A-I      intronic
chr2:152141076(-) A-I      intronic
chr2:152140707(-) A-I      intronic
chr2:152141008(-) A-I      intronic
chr2:152136191(-) A-I      intronic
chr2:152130168(-) A-I      intronic
chr2:152130775(-) A-I      intronic
chr2:152137528(-) A-I      intronic
chr2:152130072(-) A-I      intronic
chr2:152130771(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED NMI
chr2:152130072(-) A-G intron -    22484847
chr2:152130639(-) A-G intron -    22484847
chr2:152130762(-) A-G intron -    22484847
chr2:152130771(-) A-G intron -    22484847
chr2:152130774(-) A-G intron -    22484847
chr2:152131082(-) A-G intron -    22484847
chr2:152131101(-) A-G intron -    22484847
chr2:152131399(-) A-T intron -    22484847
chr2:152131401(-) T-A intron -    22484847
chr2:152131487(-) A-G intron -    22484847
chr2:152131497(-) A-G intron -    22484847
chr2:152131549(-) A-G intron -    22484847
chr2:152131588(-) A-G intron -    22484847
chr2:152131673(-) A-G intron -    22484847
chr2:152131743(-) A-G intron -    22484847
chr2:152132773(-) T-C intron -    22484847
chr2:152136053(-) A-G intron -    22484847
chr2:152136067(-) A-G intron -    22484847
chr2:152136155(-) A-G intron -    22484847
chr2:152136191(-) A-G intron -    22484847
chr2:152136285(-) A-G intron -    22484847
chr2:152136626(-) A-G intron -    22484847
chr2:152136649(-) A-G intron -    22484847
chr2:152136675(-) A-G intron -    22484847
chr2:152139740(-) A-G intron -    22484847
chr2:152139948(-) A-G intron -    22484847
chr2:152140690(-) A-G intron -    22484847
chr2:152140707(-) A-G intron -    22484847
chr2:152141016(-) A-G intron -    22484847
chr2:152141021(-) A-G intron -    22484847
chr2:152141076(-) A-G intron -    22484847
chr2:152141986(-) A-G intron -    22484847
chr2:152141994(-) G-A intron -    22484847
chr2:152142020(-) A-G intron -    22484847
chr2:152142103(-) C-T intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase NMI
chr2:152127364-152127365(-) m6A CDS       27773535
chr2:152127376-152127377(-) m6A CDS       27773535
chr2:152135455-152135456(-) m6A CDS//exon       24981863
chr2:152135482-152135483(-) m6A CDS//exon       24981863
chr2:152138554-152138555(-) m6A CDS//intron       27773535
chr2:152139390-152139391(-) m6A CDS//exon       24981863//27773535
chr2:152146221-152146222(-) m6A 5'UTR//exon       25456834
chr2:152146273-152146274(-) m6A 5'UTR//exon       25456834//24981863
chr2:152146310-152146311(-) m6A 5'UTR//exon       25456834//24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate NMI
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleus K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: kshv-miR-K12-1-3p
Interactor2: NMI

Evidence Support:


Prediction-Evidence miRanda//Targetscan
Support Database VmiReg

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