Basic Information:

  VIRBase ID:  

VHID00484095

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.6002

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-1-3p:  MIMAT0015214          CCND2:  NM_001759     

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Interactor Information:

	Interactor1	Interactor2
Symbol	kshv-miR-K12-1-3p	CCND2
miRBase Accession/Entrez ID	MIMAT0015214	894
Organism	Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	KIAK0002//MPPH3

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	CCND2	chr12:4407683(+) A-I      intronic chr12:4406504(+) A-I      intronic chr12:4408273(+) A-I      intronic chr12:4408319(+) A-I      intronic chr12:4407661(+) A-I      intronic chr12:4408272(+) A-I      intronic chr12:4406535(+) A-I      intronic chr12:4408325(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	CCND2	chr12:4406341(+) A-T intron -    22484847 chr12:4406592(+) C-T intron -    22484847 chr12:4406734(+) C-T intron -    22484847 chr12:4406735(+) T-C intron -    22484847 chr12:4406736(+) C-A intron -    22484847 chr12:4407661(+) A-G intron -    22484847 chr12:4404682(+) T-C intron -    22484847 chr12:4408272(+) A-G intron -    22484847 chr12:4408273(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	CCND2	chr12:4382959-4382960(+) m6A 5'UTR       25456834//24981863 chr12:4382977-4382978(+) m6A 5'UTR       25456834//24981863 chr12:4383080-4383081(+) m6A 5'UTR       25456834//24981863 chr12:4383140-4383141(+) m6A 5'UTR       24981863 chr12:4383146-4383147(+) m6A 5'UTR       - chr12:4383154-4383155(+) m6A 5'UTR       - chr12:4409504-4409505(+) m6A 3'UTR       22608085 chr12:4409518-4409519(+) m6A 3'UTR       24981863//22608085 chr12:4409578-4409579(+) m6A 3'UTR       24209618//24981863//22608085 chr12:4409622-4409623(+) m6A 3'UTR       24209618//24981863//22608085 chr12:4409650-4409651(+) m6A 3'UTR       24209618//24981863//22608085 chr12:4409673-4409674(+) m6A 3'UTR       24209618//24981863//22608085 chr12:4409694-4409695(+) m6A 3'UTR       24209618//24981863//22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	CCND2	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Membrane K562 cells     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: kshv-miR-K12-1-3p
Interactor2: CCND2

Evidence Support:

Weak-Evidence	PAR-CLIP
Prediction-Evidence	miRanda//PARalyzer//Targetscan
Support Database	ViRBase//VmiReg

References:

PMID	22100165	Target region	3'UTR
Source	ViRBase	Interactor1 expression	None
Tissue or cell line	BC-1 cells//BC-3 cells	Interactor2 expression	None
Description	Using PAR-CLIP, a technology which allows the direct and transcriptome-wide identification of miRNA targets, we delineate the target sites for all viral and cellular miRNAs expressed in PEL cell lines. The resulting data set revealed that KSHV miRNAs directly target more than 2000 cellular mRNAs, including many involved in pathways relevant to KSHV pathogenesis. Moreover, 58% of these mRNAs are also targeted by EBV miRNAs, via distinct binding sites.Clusters with seed matches to expressed miRNAs were considered candidate target sites. Of the clusters mapping to human 3'UTRs, 69% (BC-1) and 70% (BC-3) had seed matches to expressed miRNAs (Tables S6).Table S6A BC-1 derived 3'UTR clusters with seed matches to expressed miRNAs.