Basic Information:

  VIRBase ID:  

VHID00482359

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-11-5p:  MIMAT0015213          BTBD3:  NM_181443     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	kshv-miR-K12-11-5p	BTBD3
miRBase Accession/Entrez ID	MIMAT0015213	22903
Organism	Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	dJ742J24.1

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	BTBD3	chr20:11875468(+) A-I      intronic chr20:11875474(+) A-I      intronic chr20:11878619(+) A-I      intronic chr20:11875461(+) A-I      intronic chr20:11878629(+) A-I      intronic chr20:11878645(+) A-I      intronic chr20:11876007(+) A-I      intronic chr20:11875464(+) A-I      intronic chr20:11876005(+) A-I      intronic chr20:11875972(+) A-I      intronic chr20:11876022(+) A-I      intronic chr20:11876008(+) A-I      intronic chr20:11878620(+) A-I      intronic chr20:11878630(+) A-I      intronic chr20:11884341(+) A-I      intronic chr20:11889737(+) A-I      intronic chr20:11884355(+) A-I      intronic chr20:11884274(+) A-I      intronic chr20:11889663(+) A-I      intronic chr20:11889819(+) A-I      intronic chr20:11881541(+) A-I      intronic chr20:11887180(+) A-I      intronic chr20:11884519(+) A-I      intronic chr20:11889828(+) A-I      intronic chr20:11889801(+) A-I      intronic chr20:11889802(+) A-I      intronic chr20:11878686(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	BTBD3	chr20:11898563-11898564(+) m6A 5'UTR//intron       24981863//22575960 chr20:11898671-11898672(+) m6A 5'UTR//intron       24981863 chr20:11898879-11898880(+) m6A 5'UTR//intron       24284625//22608085 chr20:11898910-11898911(+) m6A 5'UTR//intron       24284625//22575960//22608085 chr20:11898945-11898946(+) m6A CDS//intron       24284625//24981863//22575960//22608085 chr20:11898993-11898994(+) m6A 5'UTR//CDS       24284625//24981863//22575960//22608085 chr20:11899091-11899092(+) m6A 5'UTR//CDS       24284625//24981863//26404942//22608085 chr20:11899103-11899104(+) m1A 5'UTR//CDS       26863196 chr20:11899215-11899216(+) m6A CDS       24981863 chr20:11900457-11900458(+) m6A 3'UTR//CDS//exon       24284625 chr20:11903396-11903397(+) m6A 3'UTR//CDS//exon       24284625//24209618//24981863//26404942//22575960//22608085 chr20:11903460-11903461(+) m6A 3'UTR//CDS//exon       24284625//24209618//24981863//26404942//22575960//22608085 chr20:11903546-11903547(+) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr20:11903573-11903574(+) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr20:11903777-11903778(+) m6A CDS//exon       24284625//24209618//24981863//26404942//22575960//22608085 chr20:11904025-11904026(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr20:11904057-11904058(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr20:11904135-11904136(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr20:11904175-11904176(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr20:11904190-11904191(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr20:11904295-11904296(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr20:11904316-11904317(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr20:11904564-11904565(+) m6A 3'UTR       24284625//22608085 chr20:11904673-11904674(+) m6A 3'UTR       24981863//22608085 chr20:11904707-11904708(+) m6A 3'UTR       24981863//22608085 chr20:11904712-11904713(+) m6A 3'UTR       24981863 chr20:11904731-11904732(+) m6A 3'UTR       24981863 chr20:11904739-11904740(+) m6A 3'UTR       24981863 chr20:11905313-11905314(+) Y 3'UTR       25192136

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	BTBD3	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Insoluble cytoplasm HCC cell line (HepG2)     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)|HeLa-S3 cells     -

Interaction Network (The top 100 interactions):

Interactor1: kshv-miR-K12-11-5p
Interactor2: BTBD3

Evidence Support:

Prediction-Evidence	cRep//miRanda//Rep//Targetscan
Support Database	RepTar//VmiReg