Basic Information:

  VIRBase ID:  

VHID00481821

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-11-5p:  MIMAT0015213          RGS13:  NM_002927     

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Interactor Information:

	Interactor1	Interactor2
Symbol	kshv-miR-K12-11-5p	RGS13
miRBase Accession/Entrez ID	MIMAT0015213	6003
Organism	Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	-

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	RGS13	chr1:192612943(+) A-I      intronic chr1:192612059(+) A-I      intronic chr1:192612824(+) A-I      intronic chr1:192612822(+) A-I      intronic chr1:192613024(+) A-I      intronic chr1:192612021(+) A-I      intronic chr1:192612870(+) A-I      intronic chr1:192612879(+) A-I      intronic chr1:192612808(+) A-I      intronic chr1:192612205(+) A-I      intronic chr1:192612155(+) A-I      intronic chr1:192612174(+) A-I      intronic chr1:192612067(+) A-I      intronic chr1:192612884(+) A-I      intronic chr1:192612119(+) A-I      intronic chr1:192612226(+) A-I      intronic chr1:192611508(+) A-I      intronic chr1:192612069(+) A-I      intronic chr1:192612129(+) A-I      intronic chr1:192612847(+) A-I      intronic chr1:192612143(+) A-I      intronic chr1:192612009(+) A-I      intronic chr1:192612090(+) A-I      intronic chr1:192612230(+) A-I      intronic chr1:192613001(+) A-I      intronic chr1:192612115(+) A-I      intronic chr1:192612842(+) A-I      intronic chr1:192612261(+) A-I      intronic chr1:192612244(+) A-I      intronic chr1:192612200(+) A-I      intronic chr1:192612833(+) A-I      intronic chr1:192612151(+) A-I      intronic chr1:192613002(+) A-I      intronic chr1:192612089(+) A-I      intronic chr1:192612266(+) A-I      intronic chr1:192612939(+) A-I      intronic chr1:192612935(+) A-I      intronic chr1:192612268(+) A-I      intronic chr1:192612931(+) A-I      intronic chr1:192612885(+) A-I      intronic chr1:192612252(+) A-I      intronic chr1:192612930(+) A-I      intronic chr1:192612148(+) A-I      intronic chr1:192612921(+) A-I      intronic chr1:192612932(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	RGS13	chr1:192612090(+) A-I intron -    22327324 chr1:192612155(+) A-I intron -    22327324 chr1:192612009(+) A-G intron -    22484847 chr1:192612021(+) A-G intron -    22484847 chr1:192612067(+) A-G intron -    22484847 chr1:192612090(+) A-G intron -    22484847 chr1:192612091(+) G-A intron -    22484847 chr1:192612129(+) A-G intron -    22484847 chr1:192612148(+) A-G intron -    22484847 chr1:192612151(+) A-G intron -    22484847 chr1:192612155(+) A-G intron -    22484847 chr1:192612174(+) A-G intron -    22484847 chr1:192612205(+) A-G intron -    22484847 chr1:192612226(+) A-G intron -    22484847 chr1:192612252(+) A-G intron -    22484847 chr1:192612266(+) A-G intron -    22484847 chr1:192612847(+) A-G intron -    22484847 chr1:192612870(+) A-G intron -    22484847 chr1:192612884(+) A-G intron -    22484847 chr1:192612885(+) A-G intron -    22484847 chr1:192612939(+) A-G intron -    22484847 chr1:192613002(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	RGS13	chr1:192615871-192615872(+) m6A exon//intron       27773535

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	RGS13	Exosome Blood     - Nucleus HCC cell line (HepG2)     -

Interaction Network (The top 100 interactions):

Interactor1: kshv-miR-K12-11-5p
Interactor2: RGS13

Evidence Support:

Prediction-Evidence	miRanda//Rep//Targetscan
Support Database	RepTar//VmiReg