Detail Information

Basic Information:


  VIRBase ID:  

VHID00480870

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-10a-5p:           TOR1AIP2:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol kshv-miR-K12-10a-5p TOR1AIP2
miRBase
Accession/Entrez ID		 MIMAT0015212 163590
Organism Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV) Homo sapiens
Category miRNA mRNA
Alias - IFRG15//LULL1//NET9

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR TOR1AIP2
chr1:179838070(-) A-I      ncRNA
chr1:179838088(-) A-I      ncRNA
chr1:179829468(-) A-I      3'UTR
chr1:179829498(-) A-I      3'UTR
chr1:179843449(-) A-I      ncRNA
chr1:179842408(-) A-I      intronic
chr1:179842405(-) A-I      intronic
chr1:179839385(-) A-I      intronic
chr1:179832275(-) A-I      3'UTR
chr1:179843466(-) A-I      ncRNA
chr1:179843467(-) A-I      ncRNA
chr1:179839369(-) A-I      intronic
chr1:179839366(-) A-I      intronic
chr1:179843513(-) A-I      ncRNA
chr1:179843542(-) A-I      ncRNA
chr1:179843679(-) A-I      ncRNA
chr1:179843789(-) A-I      ncRNA
chr1:179843790(-) A-I      ncRNA
chr1:179843798(-) A-I      ncRNA
chr1:179843815(-) A-I      ncRNA
chr1:179832279(-) A-I      3'UTR
chr1:179832315(-) A-I      3'UTR
chr1:179838092(-) A-I      ncRNA
chr1:179838115(-) A-I      ncRNA
chr1:179838116(-) A-I      ncRNA
chr1:179838134(-) A-I      ncRNA
chr1:179832333(-) A-I      3'UTR
chr1:179844280(-) A-I      ncRNA
chr1:179838142(-) A-I      ncRNA
chr1:179838171(-) A-I      ncRNA
chr1:179838178(-) A-I      ncRNA
chr1:179838180(-) A-I      ncRNA
chr1:179838189(-) A-I      ncRNA
chr1:179838196(-) A-I      ncRNA
chr1:179844307(-) A-I      ncRNA
chr1:179844332(-) A-I      ncRNA
chr1:179838250(-) A-I      ncRNA
chr1:179811179(-) A-I      3'UTR
chr1:179839338(-) A-I      intronic
chr1:179811208(-) A-I      3'UTR
chr1:179811214(-) A-I      3'UTR
chr1:179829157(-) A-I      3'UTR
chr1:179829161(-) A-I      3'UTR
chr1:179829184(-) A-I      3'UTR
chr1:179829186(-) A-I      3'UTR
chr1:179829187(-) A-I      3'UTR
chr1:179811252(-) A-I      3'UTR
chr1:179811253(-) A-I      3'UTR
chr1:179829197(-) A-I      3'UTR
chr1:179829202(-) A-I      3'UTR
chr1:179842449(-) A-I      intronic
chr1:179829207(-) A-I      3'UTR
chr1:179843543(-) A-I      ncRNA
chr1:179829215(-) A-I      3'UTR
chr1:179829460(-) A-I      3'UTR
chr1:179842412(-) A-I      intronic
chr1:179835615(-) A-I      intronic
chr1:179835662(-) A-I      intronic
chr1:179835741(-) A-I      intronic
chr1:179835756(-) A-I      intronic
chr1:179839267(-) A-I      intronic
chr1:179839342(-) A-I      intronic
chr1:179839410(-) A-I      intronic
chr1:179839412(-) A-I      intronic
chr1:179839520(-) A-I      intronic
chr1:179842413(-) A-I      intronic
chr1:179842417(-) A-I      intronic
chr1:179842434(-) A-I      intronic
chr1:179846599(-) A-I      intronic
chr1:179846676(-) A-I      intronic
chr1:179844213(-) A-I      ncRNA
chr1:179844300(-) A-I      ncRNA
chr1:179831987(-) A-I      3'UTR
chr1:179811223(-) A-I      3'UTR
chr1:179831123(-) A-I      3'UTR
chr1:179829482(-) A-I      3'UTR
chr1:179829570(-) A-I      3'UTR
chr1:179829104(-) A-I      3'UTR
chr1:179829485(-) A-I      3'UTR
chr1:179831034(-) A-I      3'UTR
chr1:179829120(-) A-I      3'UTR
chr1:179831897(-) A-I      3'UTR
chr1:179829196(-) A-I      3'UTR
chr1:179829210(-) A-I      3'UTR
chr1:179832019(-) A-I      3'UTR
chr1:179831895(-) A-I      3'UTR
chr1:179846446(-) A-I      5'UTR
chr1:179846454(-) A-I      5'UTR
chr1:179831837(-) A-I      3'UTR
chr1:179831980(-) A-I      3'UTR
chr1:179846459(-) A-I      5'UTR
chr1:179829448(-) A-I      3'UTR
chr1:179829247(-) A-I      3'UTR
chr1:179846484(-) A-I      5'UTR
chr1:179844274(-) A-I      ncRNA
chr1:179827274(-) A-I      intronic
chr1:179829255(-) A-I      3'UTR
chr1:179829396(-) A-I      3'UTR
chr1:179829535(-) A-I      3'UTR
chr1:179829414(-) A-I      3'UTR
chr1:179829493(-) A-I      3'UTR
chr1:179825919(-) A-I      intronic
chr1:179825922(-) A-I      intronic
chr1:179811079(-) A-I      3'UTR
chr1:179811091(-) A-I      3'UTR
chr1:179811118(-) A-I      3'UTR
chr1:179811192(-) A-I      3'UTR
chr1:179829039(-) A-I      3'UTR
chr1:179829010(-) A-I      3'UTR
chr1:179811336(-) A-I      3'UTR
chr1:179811334(-) A-I      3'UTR
chr1:179818471(-) A-I      intronic
chr1:179825952(-) A-I      intronic
chr1:179825961(-) A-I      intronic
chr1:179827068(-) A-I      intronic
chr1:179827151(-) A-I      intronic
chr1:179827153(-) A-I      intronic
chr1:179825887(-) A-I      intronic
chr1:179826039(-) A-I      intronic
chr1:179818429(-) A-I      intronic
chr1:179846651(-) A-I      intronic
chr1:179846622(-) A-I      intronic
chr1:179825858(-) A-I      intronic
chr1:179835708(-) A-I      intronic
chr1:179818623(-) A-I      intronic
chr1:179846660(-) A-I      intronic
chr1:179825820(-) A-I      intronic
chr1:179846632(-) A-I      intronic
chr1:179846646(-) A-I      intronic
chr1:179827097(-) A-I      intronic
chr1:179827123(-) A-I      intronic
chr1:179818474(-) A-I      intronic
chr1:179831038(-) A-I      3'UTR
chr1:179829028(-) A-I      3'UTR
chr1:179825103(-) A-I      intronic
chr1:179818560(-) A-I      intronic
chr1:179818107(-) A-I      intronic
chr1:179829140(-) A-I      3'UTR
chr1:179829000(-) A-I      3'UTR
chr1:179846441(-) A-I      5'UTR
chr1:179829452(-) A-I      3'UTR
chr1:179846419(-) A-I      5'UTR
chr1:179829579(-) A-I      3'UTR
chr1:179829035(-) A-I      3'UTR
chr1:179832753(-) A-I      3'UTR
chr1:179812075(-) A-I      3'UTR
chr1:179818436(-) A-I      intronic
chr1:179829001(-) A-I      3'UTR
chr1:179812484(-) A-I      3'UTR
chr1:179817056(-) A-I      intronic
chr1:179829182(-) A-I      3'UTR
chr1:179846431(-) A-I      5'UTR
chr1:179829388(-) A-I      3'UTR
chr1:179846417(-) A-I      5'UTR
chr1:179811298(-) A-I      3'UTR
chr1:179825976(-) A-I      intronic
chr1:179843781(-) A-I      ncRNA
chr1:179844313(-) A-I      ncRNA
chr1:179844273(-) A-I      ncRNA
chr1:179843803(-) A-I      ncRNA
chr1:179844413(-) A-I      ncRNA
chr1:179844308(-) A-I      ncRNA
chr1:179844311(-) A-I      ncRNA
chr1:179844317(-) A-I      ncRNA
chr1:179844170(-) A-I      ncRNA
chr1:179844246(-) A-I      ncRNA
chr1:179843892(-) A-I      ncRNA
chr1:179843725(-) A-I      ncRNA
chr1:179838252(-) A-I      ncRNA
chr1:179829077(-) A-I      3'UTR
chr1:179825819(-) A-I      intronic
chr1:179825924(-) A-I      intronic
chr1:179829534(-) A-I      3'UTR
chr1:179829425(-) A-I      3'UTR
chr1:179829023(-) A-I      3'UTR
chr1:179818208(-) A-I      intronic
chr1:179818559(-) A-I      intronic
chr1:179818515(-) A-I      intronic
chr1:179829087(-) A-I      3'UTR
chr1:179842407(-) A-I      intronic
chr1:179825965(-) A-I      intronic
chr1:179829199(-) A-I      3'UTR
chr1:179812390(-) A-I      3'UTR
chr1:179829505(-) A-I      3'UTR
chr1:179826023(-) A-I      intronic
chr1:179818610(-) A-I      intronic
chr1:179827072(-) A-I      intronic
chr1:179829508(-) A-I      3'UTR
chr1:179829100(-) A-I      3'UTR
chr1:179823922(-) A-I      intronic
chr1:179829567(-) A-I      3'UTR
chr1:179825905(-) A-I      intronic
chr1:179811259(-) A-I      3'UTR
chr1:179829316(-) A-I      3'UTR
chr1:179818506(-) A-I      intronic
chr1:179823923(-) A-I      intronic
chr1:179829136(-) A-I      3'UTR
chr1:179812856(-) A-I      3'UTR
chr1:179829400(-) A-I      3'UTR
chr1:179832278(-) A-I      3'UTR
chr1:179825967(-) A-I      intronic
chr1:179818257(-) A-I      intronic
chr1:179827179(-) A-I      intronic
chr1:179825848(-) A-I      intronic
chr1:179829509(-) A-I      3'UTR
chr1:179829517(-) A-I      3'UTR
chr1:179825824(-) A-I      intronic
chr1:179829401(-) A-I      3'UTR
chr1:179829096(-) A-I      3'UTR
chr1:179818479(-) A-I      intronic
chr1:179832213(-) A-I      3'UTR
chr1:179829031(-) A-I      3'UTR
chr1:179827091(-) A-I      intronic
chr1:179829426(-) A-I      3'UTR
chr1:179829200(-) A-I      3'UTR
chr1:179825057(-) A-I      intronic
chr1:179818021(-) A-I      intronic
chr1:179829093(-) A-I      3'UTR
chr1:179827169(-) A-I      intronic
chr1:179829110(-) A-I      3'UTR
chr1:179832772(-) A-I      3'UTR
chr1:179829141(-) A-I      3'UTR
chr1:179829495(-) A-I      3'UTR
chr1:179829201(-) A-I      3'UTR
chr1:179827071(-) A-I      intronic
chr1:179829595(-) A-I      3'UTR
chr1:179829164(-) A-I      3'UTR
chr1:179818556(-) A-I      intronic
chr1:179829139(-) A-I      3'UTR
chr1:179818084(-) A-I      intronic
chr1:179829435(-) A-I      3'UTR
chr1:179823748(-) A-I      intronic
chr1:179825928(-) A-I      intronic
chr1:179827206(-) A-I      intronic
chr1:179828992(-) A-I      3'UTR
chr1:179818375(-) A-I      intronic
chr1:179827238(-) A-I      intronic
chr1:179812777(-) A-I      3'UTR
chr1:179829020(-) A-I      3'UTR
chr1:179825913(-) A-I      intronic
chr1:179829229(-) A-I      3'UTR
chr1:179825775(-) A-I      intronic
chr1:179829233(-) A-I      3'UTR
chr1:179812887(-) A-I      3'UTR
chr1:179823742(-) A-I      intronic
chr1:179829584(-) A-I      3'UTR
chr1:179812904(-) A-I      3'UTR
chr1:179825986(-) A-I      intronic
chr1:179829530(-) A-I      3'UTR
chr1:179818847(-) A-I      intronic
chr1:179829190(-) A-I      3'UTR
chr1:179819772(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED TOR1AIP2
chr1:179843725(-) A-I intron -    15342557   //15258596
chr1:179843781(-) A-I intron -    15342557   //15258596
chr1:179843803(-) A-I intron -    15342557   //15258596
chr1:179843892(-) A-I intron -    15342557   //15258596
chr1:179844311(-) A-I intron -    15342557   //15258596
chr1:179844317(-) A-I intron -    15342557   //15258596
chr1:179829093(-) A-I exon 3'UTR    21960545
chr1:179812955(-) G-T exon 3'UTR    22484847
chr1:179818021(-) A-G intron -    22484847
chr1:179818107(-) A-G intron -    22484847
chr1:179818257(-) A-G intron -    22484847
chr1:179818436(-) A-G intron -    22484847
chr1:179818474(-) A-G intron -    22484847
chr1:179818556(-) A-G intron -    22484847
chr1:179825191(-) T-C intron -    22484847
chr1:179825192(-) G-T intron -    22484847
chr1:179825819(-) A-G intron -    22484847
chr1:179825820(-) A-G intron -    22484847
chr1:179825887(-) A-G intron -    22484847
chr1:179825905(-) A-G intron -    22484847
chr1:179825913(-) A-G intron -    22484847
chr1:179825976(-) A-G intron -    22484847
chr1:179827238(-) A-G intron -    22484847
chr1:179829028(-) A-G exon 3'UTR    22484847
chr1:179829087(-) A-G exon 3'UTR    22484847
chr1:179829093(-) A-G exon 3'UTR    22484847
chr1:179829096(-) A-G exon 3'UTR    22484847
chr1:179829425(-) A-G exon 3'UTR    22484847
chr1:179829495(-) A-G exon 3'UTR    22484847
chr1:179829508(-) A-G exon 3'UTR    22484847
chr1:179829509(-) A-G exon 3'UTR    22484847
chr1:179829584(-) A-G exon 3'UTR    22484847
chr1:179831857(-) C-T exon 3'UTR    22484847
chr1:179835708(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase TOR1AIP2
chr1:179810904-179810905(-) m6A 3'UTR       27773535
chr1:179812786-179812787(-) m6A 3'UTR       27773535
chr1:179812823-179812824(-) m6A 3'UTR       27773535
chr1:179812836-179812837(-) m6A 3'UTR       27773535
chr1:179812885-179812886(-) m6A 3'UTR       27773535
chr1:179814737-179814738(-) m6A 3'UTR       24981863//26404942//27773535//22608085
chr1:179814810-179814811(-) m6A 3'UTR       24981863//26404942//27773535//22575960//22608085
chr1:179814816-179814817(-) m6A 3'UTR       24981863//26404942//27773535//22575960//22608085
chr1:179814836-179814837(-) m6A 3'UTR       24981863//26404942//27773535//22575960//22608085
chr1:179814846-179814847(-) m6A 3'UTR       24981863//26404942//27773535//22575960//22608085
chr1:179815067-179815068(-) m6A 3'UTR       27773535
chr1:179815090-179815091(-) m6A 3'UTR       27773535
chr1:179815147-179815148(-) m6A 3'UTR       27773535
chr1:179815223-179815224(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr1:179815296-179815297(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr1:179815302-179815303(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr1:179815359-179815360(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr1:179815408-179815409(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr1:179815602-179815603(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr1:179815612-179815613(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr1:179815699-179815700(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr1:179816700-179816701(-) m6A CDS       24981863
chr1:179816710-179816711(-) m6A CDS       24981863
chr1:179816747-179816748(-) m6A CDS       24981863//27773535
chr1:179820062-179820063(-) m6A CDS       24981863//27773535//27371828//22575960//22608085
chr1:179820076-179820077(-) m6A CDS       24981863//27773535//27371828//22575960//22608085
chr1:179820093-179820094(-) m6A CDS       24981863//27773535//27371828//22575960//22608085
chr1:179820162-179820163(-) Am CDS       -
chr1:179820199-179820200(-) m6A CDS       24981863//27773535//27371828//22608085
chr1:179820263-179820264(-) m6A CDS       24981863//27773535//27371828//22608085
chr1:179820276-179820277(-) m6A CDS       24981863//27773535//27371828//22608085
chr1:179820292-179820293(-) m6A CDS       24981863//27773535//27371828//22608085
chr1:179820360-179820361(-) m6A CDS       24981863//27773535//27371828//22608085
chr1:179820377-179820378(-) m6A CDS       24981863//27773535//27371828//22608085
chr1:179820444-179820445(-) m6A CDS       24981863//27773535//22608085
chr1:179821776-179821777(-) m6A CDS       24981863//27773535//22608085
chr1:179821785-179821786(-) m6A CDS       24981863//27773535//22608085
chr1:179821801-179821802(-) m6A 5'UTR       24981863//27773535//22608085
chr1:179821807-179821808(-) m6A 5'UTR       24981863//27773535//22608085
chr1:179821851-179821852(-) m6A 5'UTR       24981863//27773535//22608085
chr1:179821868-179821869(-) m6A 5'UTR       24209618//24981863//27773535//22608085
chr1:179821873-179821874(-) m6A 5'UTR       24209618//24981863//27773535//22608085
chr1:179821884-179821885(-) m6A 5'UTR       24209618//24981863//27773535//22608085
chr1:179821891-179821892(-) m6A 5'UTR       24209618//24981863//27773535//22608085
chr1:179831564-179831565(-) m6A 3'UTR//intron       27773535
chr1:179831583-179831584(-) m6A 3'UTR//intron       27773535
chr1:179831592-179831593(-) m6A 3'UTR//intron       27773535
chr1:179831701-179831702(-) m6A 3'UTR//intron       27773535
chr1:179832241-179832242(-) m6A 3'UTR//intron       24209618
chr1:179832947-179832948(-) m6A 3'UTR//intron       24981863//22575960//22608085
chr1:179832966-179832967(-) m6A 3'UTR//intron       24981863//22575960//22608085
chr1:179833008-179833009(-) m6A 3'UTR//intron       24981863//22575960//22608085
chr1:179833027-179833028(-) m6A 3'UTR//intron       24981863//22575960//22608085
chr1:179833045-179833046(-) m6A 3'UTR//intron       24981863//22575960//22608085
chr1:179833063-179833064(-) m6A 3'UTR//intron       24284625//24981863//22575960//22608085
chr1:179833091-179833092(-) m6A 3'UTR//intron       24284625//24981863//22575960//22608085
chr1:179833208-179833209(-) m6A 3'UTR//intron       24284625
chr1:179833215-179833216(-) m6A 3'UTR//intron       24284625
chr1:179833260-179833261(-) m6A 3'UTR//intron       24284625
chr1:179834189-179834190(-) m6A CDS//intron       24284625//27773535
chr1:179834224-179834225(-) m6A CDS//intron       24284625//27773535
chr1:179834229-179834230(-) m6A CDS//intron       24284625//27773535
chr1:179834251-179834252(-) m6A CDS//intron       24284625//27773535
chr1:179834275-179834276(-) m6A CDS//intron       24284625//27773535//22575960//22608085
chr1:179834389-179834390(-) m6A 5'UTR//intron       24284625//24209618//24981863//27773535//22575960//22608085
chr1:179834401-179834402(-) m6A 5'UTR//intron       24284625//24209618//24981863//27773535//22575960//22608085
chr1:179834422-179834423(-) m6A 5'UTR//intron       24284625//24209618//24981863//27773535//22575960//22608085
chr1:179834494-179834495(-) m6A 5'UTR//intron       24284625//24209618//24981863//27773535//27371828//22575960//22608085
chr1:179834521-179834522(-) m6A 5'UTR//intron       24284625//24209618//24981863//27773535//27371828//22575960//22608085
chr1:179834546-179834547(-) m6A 5'UTR//intron       24284625//24209618//24981863//26404942//27773535//27371828//22575960//22608085
chr1:179834635-179834636(-) m6A 5'UTR//intron       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr1:179834731-179834732(-) m6A 5'UTR//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr1:179834761-179834762(-) m6A 5'UTR//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr1:179834770-179834771(-) m6A 5'UTR//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr1:179834818-179834819(-) m6A 5'UTR//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr1:179834874-179834875(-) m6A 5'UTR//intron       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr1:179834904-179834905(-) m6A 5'UTR//intron       24284625//24209618//24981863//27773535//22575960//22608085
chr1:179834969-179834970(-) m6A 5'UTR//intron       24284625//24209618//24981863//27773535//22575960//22608085
chr1:179836673-179836674(-) m6A exon//intron       24284625//24209618//24981863//27773535//22608085
chr1:179838073-179838074(-) m6A exon//intron       24981863
chr1:179846384-179846385(-) m6A 5'UTR//exon//intron       24209618
chr1:179846470-179846471(-) m6A 5'UTR//exon//intron       24284625//24209618//24981863//27773535
chr1:179846841-179846842(-) m6A 5'UTR//exon       24284625//24209618//24981863//27773535

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate TOR1AIP2
Chromatin K562 cells     -
Cytoplasm Nasopharyngeal carcinoma cells     20498841
Cytosol HCC cell line (HepG2)     -
Exosome Blood     -
Insoluble cytoplasm K562 cells     -
Membrane HCC cell line (HepG2)     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus Nasopharyngeal carcinoma cells     20498841
Nucleus HeLa-S3 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: kshv-miR-K12-10a-5p
Interactor2: TOR1AIP2

Evidence Support:


Prediction-Evidence miRanda//Targetscan
Support Database VmiReg

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