Basic Information:

  VIRBase ID:  

VHID00480243

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-10a-5p:  MIMAT0015212          DDA1:  NM_024050     

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Interactor Information:

	Interactor1	Interactor2
Symbol	kshv-miR-K12-10a-5p	DDA1
miRBase Accession/Entrez ID	MIMAT0015212	79016
Organism	Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	C19orf58//PCIA1

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	DDA1	chr19:17429269(+) A-I      intronic chr19:17429300(+) A-I      intronic chr19:17429303(+) A-I      intronic chr19:17429314(+) A-I      intronic chr19:17428063(+) A-I      intronic chr19:17428064(+) A-I      intronic chr19:17427607(+) A-I      intronic chr19:17427772(+) A-I      intronic chr19:17429220(+) A-I      intronic chr19:17429359(+) A-I      intronic chr19:17429390(+) A-I      intronic chr19:17427278(+) A-I      intronic chr19:17427227(+) A-I      intronic chr19:17428979(+) A-I      intronic chr19:17428541(+) A-I      intronic chr19:17427399(+) A-I      intronic chr19:17429245(+) A-I      intronic chr19:17427451(+) A-I      intronic chr19:17430263(+) A-I      intronic chr19:17430248(+) A-I      intronic chr19:17427203(+) A-I      intronic chr19:17428528(+) A-I      intronic chr19:17428955(+) A-I      intronic chr19:17428857(+) A-I      intronic chr19:17427589(+) A-I      intronic chr19:17428991(+) A-I      intronic chr19:17427503(+) A-I      intronic chr19:17428452(+) A-I      intronic chr19:17427983(+) A-I      intronic chr19:17429001(+) A-I      intronic chr19:17428568(+) A-I      intronic chr19:17427548(+) A-I      intronic chr19:17428337(+) A-I      intronic chr19:17427780(+) A-I      intronic chr19:17429141(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	DDA1	chr19:17420456-17420457(+) m6A 5'UTR//exon       24284625//25456834//24981863//22575960 chr19:17424848-17424849(+) m6A CDS//exon       24284625//24981863//22575960 chr19:17424892-17424893(+) m6A CDS//exon       24284625//24981863//22575960 chr19:17425193-17425194(+) m6A CDS//exon       24284625 chr19:17425304-17425305(+) m6A exon//intron       24284625 chr19:17426667-17426668(+) m6A exon//intron       - chr19:17426759-17426760(+) m6A CDS//exon       24284625//24981863//22608085 chr19:17426796-17426797(+) m6A CDS//exon       24284625//24209618//25456834//24981863//27371828//27773536//22608085 chr19:17430373-17430374(+) m6A CDS//exon       24284625//24209618//25456834//24981863//27371828//27773536//22608085 chr19:17430432-17430433(+) m6A CDS//exon       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085 chr19:17430445-17430446(+) m6A CDS//exon       24284625//24209618//25456834//24981863//26404942//27371828//27773536//22575960//22608085 chr19:17430457-17430458(+) m6A CDS//exon       24284625//24209618//25456834//24981863//26404942//27371828//27773536//22575960//22608085 chr19:17430466-17430467(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//26404942//27371828//27773536//22575960//22608085 chr19:17430677-17430678(+) m6A 3'UTR//intron       24284625//24209618 chr19:17430684-17430685(+) m6A 3'UTR//intron       24284625//24209618 chr19:17430723-17430724(+) m6A 3'UTR//intron       24284625 chr19:17430795-17430796(+) m6A 3'UTR//intron       24284625//24981863 chr19:17430882-17430883(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr19:17430929-17430930(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr19:17430958-17430959(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr19:17431054-17431055(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//22608085 chr19:17431214-17431215(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr19:17431266-17431267(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr19:17431276-17431277(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr19:17431315-17431316(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr19:17431411-17431412(+) m6A 3'UTR       24284625//25456834//24981863//22575960//22608085 chr19:17432162-17432163(+) m6A 3'UTR       24209618 chr19:17432257-17432258(+) m6A 3'UTR       24209618 chr19:17432684-17432685(+) m6A 3'UTR       25456834//22575960 chr19:17432843-17432844(+) m6A 3'UTR       24284625//25456834//24981863//22608085 chr19:17432915-17432916(+) m6A 3'UTR       24284625//25456834 chr19:17433094-17433095(+) m6A 3'UTR       24284625 chr19:17433112-17433113(+) m6A 3'UTR       24284625 chr19:17433239-17433240(+) m6A 3'UTR       24284625 chr19:17433292-17433293(+) m6A 3'UTR       24284625 chr19:17433506-17433507(+) m6A 3'UTR       24284625 chr19:17433546-17433547(+) m6A 3'UTR       24284625 chr19:17433586-17433587(+) m6A 3'UTR       24284625 chr19:17433709-17433710(+) m6A 3'UTR       24284625//24981863 chr19:17433749-17433750(+) m6A 3'UTR       24284625//24981863 chr19:17434098-17434099(+) m6A 3'UTR       27773535

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	DDA1	Chromatin K562 cells     - Exosome Blood     - Insoluble cytoplasm HCC cell line (HepG2)     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: kshv-miR-K12-10a-5p
Interactor2: DDA1

Evidence Support:

Prediction-Evidence	miRanda//Targetscan
Support Database	VmiReg