Basic Information:

  VIRBase ID:  

VHID00480004

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-10a-5p:  MIMAT0015212          PPP2R2D:  NR_033191     

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Interactor Information:

	Interactor1	Interactor2
Symbol	kshv-miR-K12-10a-5p	PPP2R2D
miRBase Accession/Entrez ID	MIMAT0015212	55844
Organism	Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	B55D//B55delta//MDS026

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	PPP2R2D	chr10:133749778(+) A-I      intronic chr10:133765010(+) A-I      intronic chr10:133749832(+) A-I      intronic chr10:133749798(+) A-I      intronic chr10:133765175(+) A-I      intronic chr10:133765154(+) A-I      intronic chr10:133765107(+) A-I      intronic chr10:133749835(+) A-I      intronic chr10:133749691(+) A-I      intronic chr10:133749447(+) A-I      intronic chr10:133749492(+) A-I      intronic chr10:133765065(+) A-I      intronic chr10:133749391(+) A-I      intronic chr10:133749512(+) A-I      intronic chr10:133749814(+) A-I      intronic chr10:133749517(+) A-I      intronic chr10:133749770(+) A-I      intronic chr10:133749792(+) A-I      intronic chr10:133749808(+) A-I      intronic chr10:133765071(+) A-I      intronic chr10:133749415(+) A-I      intronic chr10:133749794(+) A-I      intronic chr10:133749436(+) A-I      intronic chr10:133765174(+) A-I      intronic chr10:133765178(+) A-I      intronic chr10:133749446(+) A-I      intronic chr10:133749708(+) A-I      intronic chr10:133749353(+) A-I      intronic chr10:133749392(+) A-I      intronic chr10:133749726(+) A-I      intronic chr10:133749802(+) A-I      intronic chr10:133749912(+) A-I      intronic chr10:133749420(+) A-I      intronic chr10:133749367(+) A-I      intronic chr10:133749752(+) A-I      intronic chr10:133749924(+) A-I      intronic chr10:133759038(+) A-I      intronic chr10:133749779(+) A-I      intronic chr10:133749884(+) A-I      intronic chr10:133749732(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	PPP2R2D	chr10:133754090-133754091(+) m6A 3'UTR//5'UTR//CDS//exon       24981863 chr10:133754164-133754165(+) m6A 3'UTR//5'UTR//CDS//exon       24981863 chr10:133754172-133754173(+) m6A 3'UTR//5'UTR//CDS//exon       24981863 chr10:133763691-133763692(+) Cm intron       - chr10:133769237-133769238(+) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr10:133769283-133769284(+) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr10:133769301-133769302(+) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr10:133769354-133769355(+) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr10:133769363-133769364(+) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr10:133769374-133769375(+) Am 3'UTR//CDS//exon       - chr10:133769405-133769406(+) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr10:133769453-133769454(+) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr10:133769483-133769484(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr10:133769513-133769514(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr10:133769559-133769560(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr10:133769590-133769591(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr10:133769651-133769652(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr10:133769699-133769700(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr10:133769773-133769774(+) m6A 3'UTR       24284625//24981863//22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	PPP2R2D	Chromatin K562 cells     - Cytosol HCC cell line (HepG2)     - Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: kshv-miR-K12-10a-5p
Interactor2: PPP2R2D

Evidence Support:

Prediction-Evidence	miRanda//RNAHybrid
Support Database	VmiReg