Basic Information:

  VIRBase ID:  

VHID00479919

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-10a-5p:  MIMAT0015212          ZDHHC4:  NR_163913     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	kshv-miR-K12-10a-5p	ZDHHC4
miRBase Accession/Entrez ID	MIMAT0015212	55146
Organism	Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	ZNF374

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	ZDHHC4	chr7:6626248(+) A-I      intronic chr7:6626341(+) A-I      intronic chr7:6626799(+) A-I      intronic chr7:6626800(+) A-I      intronic chr7:6626812(+) A-I      intronic chr7:6627558(+) A-I      intronic chr7:6627596(+) A-I      intronic chr7:6625729(+) A-I      intronic chr7:6627601(+) A-I      intronic chr7:6627614(+) A-I      intronic chr7:6627652(+) A-I      intronic chr7:6627677(+) A-I      intronic chr7:6627680(+) A-I      intronic chr7:6627705(+) A-I      intronic chr7:6627770(+) A-I      intronic chr7:6627685(+) A-I      intronic chr7:6622704(+) A-I      intronic chr7:6627662(+) A-I      intronic chr7:6627654(+) A-I      intronic chr7:6626295(+) A-I      intronic chr7:6626236(+) A-I      intronic chr7:6626316(+) A-I      intronic chr7:6622766(+) A-I      intronic chr7:6622743(+) A-I      intronic chr7:6622737(+) A-I      intronic chr7:6622732(+) A-I      intronic chr7:6622656(+) A-I      intronic chr7:6622655(+) A-I      intronic chr7:6622618(+) A-I      intronic chr7:6622606(+) A-I      intronic chr7:6622551(+) A-I      intronic chr7:6622371(+) A-I      intronic chr7:6622288(+) A-I      intronic chr7:6622248(+) A-I      intronic chr7:6622229(+) A-I      intronic chr7:6622218(+) A-I      intronic chr7:6625314(+) A-I      intronic chr7:6625733(+) A-I      intronic chr7:6625734(+) A-I      intronic chr7:6625290(+) A-I      intronic chr7:6625271(+) A-I      intronic chr7:6625260(+) A-I      intronic chr7:6625226(+) A-I      intronic chr7:6625211(+) A-I      intronic chr7:6625203(+) A-I      intronic chr7:6625202(+) A-I      intronic chr7:6625198(+) A-I      intronic chr7:6625144(+) A-I      intronic chr7:6625045(+) A-I      intronic chr7:6626281(+) A-I      intronic chr7:6626272(+) A-I      intronic chr7:6625040(+) A-I      intronic chr7:6625022(+) A-I      intronic chr7:6625749(+) A-I      intronic chr7:6624999(+) A-I      intronic chr7:6626287(+) A-I      intronic chr7:6619721(+) A-I      intronic chr7:6619547(+) A-I      intronic chr7:6619538(+) A-I      intronic chr7:6619093(+) A-I      intronic chr7:6619042(+) A-I      intronic chr7:6619028(+) A-I      intronic chr7:6618997(+) A-I      intronic chr7:6624369(+) A-I      intronic chr7:6624334(+) A-I      intronic chr7:6624301(+) A-I      intronic chr7:6626246(+) A-I      intronic chr7:6622688(+) A-I      intronic chr7:6625000(+) A-I      intronic chr7:6622249(+) A-I      intronic chr7:6622278(+) A-I      intronic chr7:6624365(+) A-I      intronic chr7:6626163(+) A-I      intronic chr7:6625606(+) A-I      intronic chr7:6624364(+) A-I      intronic chr7:6619867(+) A-I      intronic chr7:6624997(+) A-I      intronic chr7:6622167(+) A-I      intronic chr7:6625617(+) A-I      intronic chr7:6625620(+) A-I      intronic chr7:6624339(+) A-I      intronic chr7:6624304(+) A-I      intronic chr7:6627373(+) A-I      intronic chr7:6625504(+) A-I      intronic chr7:6626224(+) A-I      intronic chr7:6618887(+) A-I      intronic chr7:6625663(+) A-I      intronic chr7:6622282(+) A-I      intronic chr7:6626290(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	ZDHHC4	chr7:6623622(+) A-I intron -    22327324 chr7:6624296(+) A-I intron -    22327324

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	ZDHHC4	chr7:6617175-6617176(+) m6A 5'UTR//exon//intron       24981863 chr7:6628361-6628362(+) m6A CDS//exon       24284625//25456834//24981863//22608085 chr7:6628455-6628456(+) m6A CDS//exon       24284625//25456834//24981863//22575960//22608085 chr7:6628531-6628532(+) m6A CDS//exon       24284625//25456834//24981863//27773535//22608085 chr7:6628722-6628723(+) m6A 3'UTR       24209618//25456834//24981863//22608085 chr7:6628795-6628796(+) m6A 3'UTR       25456834//24981863//22608085 chr7:6628811-6628812(+) m6A 3'UTR       25456834//24981863//22608085 chr7:6628826-6628827(+) m6A 3'UTR       25456834//24981863//22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	ZDHHC4	Cytosol K562 cells     - Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Membrane HCC cell line (HepG2)     - Nucleolus K562 cells     - Nucleus K562 cells     - Ribosome-free cytosol Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: kshv-miR-K12-10a-5p
Interactor2: ZDHHC4

Evidence Support:

Prediction-Evidence	miRanda//Targetscan
Support Database	VmiReg