Basic Information:

  VIRBase ID:  

VHID00479903

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-10a-5p:  MIMAT0015212          C1orf159:  NM_017891     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	kshv-miR-K12-10a-5p	C1orf159
miRBase Accession/Entrez ID	MIMAT0015212	54991
Organism	Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	-

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	C1orf159	chr1:1039204(-) A-I      intronic chr1:1048452(-) A-I      intronic chr1:1049472(-) A-I      intronic chr1:1049501(-) A-I      intronic chr1:1048441(-) A-I      intronic chr1:1048254(-) A-I      intronic chr1:1036837(-) A-I      intronic chr1:1048668(-) A-I      intronic chr1:1037195(-) A-I      intronic chr1:1036811(-) A-I      intronic chr1:1032611(-) A-I      intronic chr1:1032572(-) A-I      intronic chr1:1032280(-) A-I      intronic chr1:1032272(-) A-I      intronic chr1:1040067(-) A-I      intronic chr1:1037943(-) A-I      intronic chr1:1036751(-) A-I      intronic chr1:1048530(-) A-I      intronic chr1:1036744(-) A-I      intronic chr1:1036637(-) A-I      intronic chr1:1028311(-) A-I      intronic chr1:1031610(-) A-I      intronic chr1:1029599(-) A-I      intronic chr1:1048572(-) A-I      intronic chr1:1036801(-) A-I      intronic chr1:1038430(-) A-I      intronic chr1:1038341(-) A-I      intronic chr1:1041249(-) A-I      intronic chr1:1038439(-) A-I      intronic chr1:1048513(-) A-I      intronic chr1:1032624(-) A-I      intronic chr1:1033484(-) A-I      intronic chr1:1033084(-) A-I      intronic chr1:1031657(-) A-I      intronic chr1:1032625(-) A-I      intronic chr1:1048901(-) A-I      intronic chr1:1036755(-) A-I      intronic chr1:1031761(-) A-I      intronic chr1:1037903(-) A-I      intronic chr1:1032855(-) A-I      intronic chr1:1048418(-) A-I      intronic chr1:1028361(-) A-I      intronic chr1:1036697(-) A-I      intronic chr1:1044907(-) A-I      intronic chr1:1049326(-) A-I      intronic chr1:1041005(-) A-I      intronic chr1:1038185(-) A-I      intronic chr1:1048331(-) A-I      intronic chr1:1049464(-) A-I      intronic chr1:1039333(-) A-I      intronic chr1:1029589(-) A-I      intronic chr1:1049529(-) A-I      intronic chr1:1039582(-) A-I      intronic chr1:1038337(-) A-I      intronic chr1:1038238(-) A-I      intronic chr1:1041178(-) A-I      intronic chr1:1032680(-) A-I      intronic chr1:1028330(-) A-I      intronic chr1:1041011(-) A-I      intronic chr1:1031827(-) A-I      intronic chr1:1034103(-) A-I      intronic chr1:1037289(-) A-I      intronic chr1:1033630(-) A-I      intronic chr1:1031712(-) A-I      intronic chr1:1033721(-) A-I      intronic chr1:1034242(-) A-I      intronic chr1:1041192(-) A-I      intronic chr1:1028219(-) A-I      intronic chr1:1048428(-) A-I      intronic chr1:1040766(-) A-I      intronic chr1:1048543(-) A-I      intronic chr1:1040665(-) A-I      intronic chr1:1033633(-) A-I      intronic chr1:1036607(-) A-I      intronic chr1:1034130(-) A-I      intronic chr1:1028416(-) A-I      intronic chr1:1029606(-) A-I      intronic chr1:1049470(-) A-I      intronic chr1:1038217(-) A-I      intronic chr1:1032233(-) A-I      intronic chr1:1038346(-) A-I      intronic chr1:1040884(-) A-I      intronic chr1:1037208(-) A-I      intronic chr1:1033587(-) A-I      intronic chr1:1039465(-) A-I      intronic chr1:1029919(-) A-I      intronic chr1:1032931(-) A-I      intronic chr1:1031666(-) A-I      intronic chr1:1044985(-) A-I      intronic chr1:1036741(-) A-I      intronic chr1:1032177(-) A-I      intronic chr1:1049467(-) A-I      intronic chr1:1038121(-) A-I      intronic chr1:1032392(-) A-I      intronic chr1:1037404(-) A-I      intronic chr1:1035397(-) A-I      intronic chr1:1036738(-) A-I      intronic chr1:1032552(-) A-I      intronic chr1:1040780(-) A-I      intronic chr1:1040764(-) A-I      intronic chr1:1034248(-) A-I      intronic chr1:1049758(-) A-I      intronic chr1:1031642(-) A-I      intronic chr1:1049581(-) A-I      intronic chr1:1033517(-) A-I      intronic chr1:1049532(-) A-I      intronic chr1:1037370(-) A-I      intronic chr1:1032299(-) A-I      intronic chr1:1048364(-) A-I      intronic chr1:1038496(-) A-I      intronic chr1:1048833(-) A-I      intronic chr1:1041072(-) A-I      intronic chr1:1048427(-) A-I      intronic chr1:1036695(-) A-I      intronic chr1:1037330(-) A-I      intronic chr1:1033548(-) A-I      intronic chr1:1032655(-) A-I      intronic chr1:1036819(-) A-I      intronic chr1:1049498(-) A-I      intronic chr1:1033655(-) A-I      intronic chr1:1037925(-) A-I      intronic chr1:1037916(-) A-I      intronic chr1:1039334(-) A-I      intronic chr1:1039200(-) A-I      intronic chr1:1033669(-) A-I      intronic chr1:1048624(-) A-I      intronic chr1:1032520(-) A-I      intronic chr1:1038441(-) A-I      intronic chr1:1038416(-) A-I      intronic chr1:1029575(-) A-I      intronic chr1:1028207(-) A-I      intronic chr1:1039211(-) A-I      intronic chr1:1039506(-) A-I      intronic chr1:1037930(-) A-I      intronic chr1:1038102(-) A-I      intronic chr1:1032764(-) A-I      intronic chr1:1032835(-) A-I      intronic chr1:1048263(-) A-I      intronic chr1:1046832(-) A-I      intronic chr1:1049057(-) A-I      intronic chr1:1036660(-) A-I      intronic chr1:1048413(-) A-I      intronic chr1:1037286(-) A-I      intronic chr1:1039656(-) A-I      intronic chr1:1046807(-) A-I      intronic chr1:1031821(-) A-I      intronic chr1:1041208(-) A-I      intronic chr1:1036658(-) A-I      intronic chr1:1049139(-) A-I      intronic chr1:1031794(-) A-I      intronic chr1:1033614(-) A-I      intronic chr1:1049688(-) A-I      intronic chr1:1048231(-) A-I      intronic chr1:1033722(-) A-I      intronic chr1:1049262(-) A-I      intronic chr1:1039196(-) A-I      intronic chr1:1048641(-) A-I      intronic chr1:1040643(-) A-I      intronic chr1:1049113(-) A-I      intronic chr1:1028298(-) A-I      intronic chr1:1032583(-) A-I      intronic chr1:1044993(-) A-I      intronic chr1:1036800(-) A-I      intronic chr1:1032736(-) A-I      intronic chr1:1032651(-) A-I      intronic chr1:1048350(-) A-I      intronic chr1:1037255(-) A-I      intronic chr1:1049194(-) A-I      intronic chr1:1040695(-) A-I      intronic chr1:1048634(-) A-I      intronic chr1:1037217(-) A-I      intronic chr1:1048954(-) A-I      intronic chr1:1032398(-) A-I      intronic chr1:1032391(-) A-I      intronic chr1:1037187(-) A-I      intronic chr1:1037938(-) A-I      intronic chr1:1036841(-) A-I      intronic chr1:1031775(-) A-I      intronic chr1:1041198(-) A-I      intronic chr1:1032286(-) A-I      intronic chr1:1049732(-) A-I      intronic chr1:1048532(-) A-I      intronic chr1:1031820(-) A-I      intronic chr1:1038504(-) A-I      intronic chr1:1039118(-) A-I      intronic chr1:1032595(-) A-I      intronic chr1:1033516(-) A-I      intronic chr1:1032584(-) A-I      intronic chr1:1028348(-) A-I      intronic chr1:1031747(-) A-I      intronic chr1:1033053(-) A-I      intronic chr1:1049168(-) A-I      intronic chr1:1049705(-) A-I      intronic chr1:1037340(-) A-I      intronic chr1:1036645(-) A-I      intronic chr1:1037369(-) A-I      intronic chr1:1031658(-) A-I      intronic chr1:1041142(-) A-I      intronic chr1:1028373(-) A-I      intronic chr1:1033588(-) A-I      intronic chr1:1048332(-) A-I      intronic chr1:1032365(-) A-I      intronic chr1:1039226(-) A-I      intronic chr1:1040089(-) A-I      intronic chr1:1037352(-) A-I      intronic chr1:1038473(-) A-I      intronic chr1:1048186(-) A-I      intronic chr1:1049006(-) A-I      intronic chr1:1049043(-) A-I      intronic chr1:1035375(-) A-I      intronic chr1:1040872(-) A-I      intronic chr1:1028232(-) A-I      intronic chr1:1049679(-) A-I      intronic chr1:1034219(-) A-I      intronic chr1:1033509(-) A-I      intronic chr1:1049524(-) A-I      intronic chr1:1038272(-) A-I      intronic chr1:1040051(-) A-I      intronic chr1:1031682(-) A-I      intronic chr1:1048099(-) A-I      intronic chr1:1048245(-) A-I      intronic chr1:1040013(-) A-I      intronic chr1:1031628(-) A-I      intronic chr1:1041154(-) A-I      intronic chr1:1033076(-) A-I      intronic chr1:1033594(-) A-I      intronic chr1:1029576(-) A-I      intronic chr1:1038347(-) A-I      intronic chr1:1039479(-) A-I      intronic chr1:1040716(-) A-I      intronic chr1:1028265(-) A-I      intronic chr1:1031785(-) A-I      intronic chr1:1036591(-) A-I      intronic chr1:1048529(-) A-I      intronic chr1:1028318(-) A-I      intronic chr1:1048698(-) A-I      intronic chr1:1033744(-) A-I      intronic chr1:1040855(-) A-I      intronic chr1:1040817(-) A-I      intronic chr1:1041113(-) A-I      intronic chr1:1038115(-) A-I      intronic chr1:1032917(-) A-I      intronic chr1:1044912(-) A-I      intronic chr1:1048702(-) A-I      intronic chr1:1049530(-) A-I      intronic chr1:1041098(-) A-I      intronic chr1:1048384(-) A-I      intronic chr1:1039203(-) A-I      intronic chr1:1032735(-) A-I      intronic chr1:1028264(-) A-I      intronic chr1:1032369(-) A-I      intronic chr1:1048935(-) A-I      intronic chr1:1038426(-) A-I      intronic chr1:1038469(-) A-I      intronic chr1:1049575(-) A-I      intronic chr1:1032281(-) A-I      intronic chr1:1040192(-) A-I      intronic chr1:1028292(-) A-I      intronic chr1:1032779(-) A-I      intronic chr1:1044939(-) A-I      intronic chr1:1049611(-) A-I      intronic chr1:1048365(-) A-I      intronic chr1:1032303(-) A-I      intronic chr1:1040803(-) A-I      intronic chr1:1039216(-) A-I      intronic chr1:1032647(-) A-I      intronic chr1:1032400(-) A-I      intronic chr1:1040075(-) A-I      intronic chr1:1048671(-) A-I      intronic chr1:1032167(-) A-I      intronic chr1:1040188(-) A-I      intronic chr1:1044962(-) A-I      intronic chr1:1048464(-) A-I      intronic chr1:1034129(-) A-I      intronic chr1:1041088(-) A-I      intronic chr1:1039453(-) A-I      intronic chr1:1029664(-) A-I      intronic chr1:1040092(-) A-I      intronic chr1:1046884(-) A-I      intronic chr1:1048405(-) A-I      intronic chr1:1032268(-) A-I      intronic chr1:1032501(-) A-I      intronic chr1:1033001(-) A-I      intronic chr1:1028276(-) A-I      intronic chr1:1034170(-) A-I      intronic chr1:1032921(-) A-I      intronic chr1:1040860(-) A-I      intronic chr1:1029870(-) A-I      intronic chr1:1032669(-) A-I      intronic chr1:1036763(-) A-I      intronic chr1:1048251(-) A-I      intronic chr1:1036700(-) A-I      intronic chr1:1035414(-) A-I      intronic chr1:1049261(-) A-I      intronic chr1:1028335(-) A-I      intronic chr1:1049132(-) A-I      intronic chr1:1040791(-) A-I      intronic chr1:1048193(-) A-I      intronic chr1:1032664(-) A-I      intronic chr1:1037207(-) A-I      intronic chr1:1049727(-) A-I      intronic chr1:1033578(-) A-I      intronic chr1:1049056(-) A-I      intronic chr1:1049461(-) A-I      intronic chr1:1032700(-) A-I      intronic chr1:1032690(-) A-I      intronic chr1:1038218(-) A-I      intronic chr1:1033728(-) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	C1orf159	chr1:1037916(-) A-I intron -    22327324 chr1:1028368(-) A-I intron -    21960545 chr1:1035397(-) A-I intron -    21960545 chr1:1035478(-) A-I intron -    21960545 chr1:1048186(-) A-G intron -    22484847 chr1:1048263(-) A-G intron -    22484847 chr1:1048698(-) A-G intron -    22484847 chr1:1049113(-) A-G intron -    22484847 chr1:1029575(-) A-G intron -    22484847 chr1:1029589(-) A-G intron -    22484847 chr1:1031658(-) A-G intron -    22484847 chr1:1031712(-) A-G intron -    22484847 chr1:1031827(-) A-G intron -    22484847 chr1:1032365(-) A-G intron -    22484847 chr1:1032369(-) A-G intron -    22484847 chr1:1032391(-) A-G intron -    22484847 chr1:1032392(-) A-G intron -    22484847 chr1:1032680(-) A-G intron -    22484847 chr1:1032736(-) A-G intron -    22484847 chr1:1034103(-) A-G intron -    22484847 chr1:1034248(-) A-G intron -    22484847 chr1:1035375(-) A-G intron -    22484847 chr1:1035414(-) A-G intron -    22484847 chr1:1036697(-) A-G intron -    22484847 chr1:1036700(-) A-G intron -    22484847 chr1:1037217(-) A-G intron -    22484847 chr1:1037255(-) A-G intron -    22484847 chr1:1037286(-) A-G intron -    22484847 chr1:1037916(-) A-G intron -    22484847 chr1:1037925(-) A-G intron -    22484847 chr1:1038441(-) A-G intron -    22484847 chr1:1038469(-) A-G intron -    22484847 chr1:1039203(-) A-G intron -    22484847 chr1:1039216(-) A-G intron -    22484847 chr1:1039479(-) A-G intron -    22484847 chr1:1039656(-) A-G intron -    22484847 chr1:1040075(-) A-G intron -    22484847 chr1:1048331(-) A-G intron -    22484847 chr1:1048332(-) A-G intron -    22484847 chr1:1048365(-) A-G intron -    22484847 chr1:1048464(-) A-G intron -    22484847 chr1:1048529(-) A-G intron -    22484847 chr1:1048532(-) A-G intron -    22484847 chr1:1049461(-) A-G intron -    22484847 chr1:1049581(-) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	C1orf159	chr1:1017262-1017263(-) m6A 3'UTR//exon       24284625//27773536 chr1:1017346-1017347(-) m6A 3'UTR//exon       24284625//27773536 chr1:1017575-1017576(-) m6A 3'UTR//exon       24284625//27773535 chr1:1017704-1017705(-) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085 chr1:1017742-1017743(-) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//28052920//27371828//27773536//22575960//22608085 chr1:1017756-1017757(-) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//28052920//27371828//27773536//22575960//22608085 chr1:1017769-1017770(-) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//28052920//27371828//27773536//22575960//22608085 chr1:1017822-1017823(-) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//28052920//27371828//27773536//22575960//22608085 chr1:1017834-1017835(-) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//28052920//27371828//27773536//22575960//22608085 chr1:1017868-1017869(-) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//28052920//27371828//27773536//22575960//22608085 chr1:1017987-1017988(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085 chr1:1018037-1018038(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085 chr1:1018059-1018060(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085 chr1:1018170-1018171(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085 chr1:1018206-1018207(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085 chr1:1018232-1018233(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085 chr1:1018258-1018259(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085 chr1:1018327-1018328(-) m6A 3'UTR//CDS//exon       24284625//25456834//24981863//27371828//22575960//22608085 chr1:1018486-1018487(-) m6A exon//intron       - chr1:1018584-1018585(-) m6A exon//intron       25456834//24981863//22608085 chr1:1018655-1018656(-) m6A exon//intron       25456834//24981863//22608085 chr1:1018699-1018700(-) m6A exon//intron       24284625//24981863 chr1:1018761-1018762(-) m6A exon//intron       24284625//24981863//27773535 chr1:1018783-1018784(-) m6A exon//intron       24284625//24981863//27773535 chr1:1018976-1018977(-) m6A exon//intron       24284625//25456834 chr1:1018988-1018989(-) m6A exon//intron       24284625//25456834 chr1:1019026-1019027(-) m6A exon//intron       24284625//25456834//24981863 chr1:1019072-1019073(-) m6A exon//intron       24284625//24981863 chr1:1019142-1019143(-) m6A exon//intron       24284625//24981863 chr1:1019262-1019263(-) m6A exon//intron       24284625//25456834 chr1:1019287-1019288(-) m6A exon//intron       24284625//25456834 chr1:1019310-1019311(-) m6A 3'UTR//CDS//exon//intron       24284625//25456834 chr1:1019378-1019379(-) m6A 3'UTR//CDS//exon//intron       24284625//25456834 chr1:1019422-1019423(-) m6A 3'UTR//CDS//exon//intron       24284625 chr1:1019441-1019442(-) m6A 3'UTR//CDS//exon//intron       24284625 chr1:1022553-1022554(-) m6A 3'UTR//CDS//exon       - chr1:1022721-1022722(-) m6A exon//intron       - chr1:1022767-1022768(-) m6A exon//intron       - chr1:1022917-1022918(-) m6A 3'UTR//CDS//exon       24284625 chr1:1026352-1026353(-) m6A 3'UTR//CDS//intron       - chr1:1027422-1027423(-) m6A 5'UTR//exon       24981863 chr1:1027481-1027482(-) m6A 5'UTR//exon       24981863 chr1:1028007-1028008(-) m6A 5'UTR//intron       24284625 chr1:1028066-1028067(-) m6A 5'UTR//intron       24284625//25456834 chr1:1028083-1028084(-) m6A 5'UTR//intron       24284625//25456834 chr1:1028105-1028106(-) m6A 5'UTR//intron       24284625

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	C1orf159	Chromatin K562 cells     - Cytosol HCC cell line (HepG2)     - Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)|HeLa-S3 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: kshv-miR-K12-10a-5p
Interactor2: C1orf159

Evidence Support:

Prediction-Evidence	miRanda//PITA//RNAHybrid//Targetscan
Support Database	VmiReg