Basic Information:

  VIRBase ID:  

VHID00479799

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-10a-5p:  MIMAT0015212          HOOK1:  NM_015888     

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Interactor Information:

	Interactor1	Interactor2
Symbol	kshv-miR-K12-10a-5p	HOOK1
miRBase Accession/Entrez ID	MIMAT0015212	51361
Organism	Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	HK1

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	HOOK1	chr1:60322075(+) A-I      intronic chr1:60322080(+) A-I      intronic chr1:60320517(+) A-I      intronic chr1:60296782(+) A-I      intronic chr1:60322078(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	HOOK1	chr1:60320517(+) A-G intron -    22484847 chr1:60322078(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	HOOK1	chr1:60314173-60314174(+) m6A CDS//exon       24981863 chr1:60314764-60314765(+) m6A CDS//exon       24981863 chr1:60314790-60314791(+) m6A CDS//exon       24981863 chr1:60314827-60314828(+) m6A CDS//exon       24981863 chr1:60324101-60324102(+) m6A CDS//exon       24981863 chr1:60328521-60328522(+) m6A CDS//exon       24981863 chr1:60330804-60330805(+) m6A exon//intron       24981863 chr1:60330840-60330841(+) m6A CDS//exon//intron       24981863 chr1:60330873-60330874(+) m6A CDS//exon//intron       24981863//27773535 chr1:60330879-60330880(+) m6A CDS//exon//intron       24981863//27773535 chr1:60331559-60331560(+) m6A CDS//exon       24981863//27773535//22608085 chr1:60333930-60333931(+) m6A CDS//exon       24981863//22608085 chr1:60338637-60338638(+) m6A 3'UTR//exon       24981863 chr1:60338649-60338650(+) m6A 3'UTR//exon       24981863 chr1:60338654-60338655(+) m6A 3'UTR//exon       24981863 chr1:60338659-60338660(+) m6A 3'UTR//exon       24981863 chr1:60338667-60338668(+) m6A 3'UTR//exon       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	HOOK1	Cytosol HCC cell line (HepG2)     - Exosome Blood     - Nucleus HCC cell line (HepG2)|HeLa-S3 cells     -

Interaction Network (The top 100 interactions):

Interactor1: kshv-miR-K12-10a-5p
Interactor2: HOOK1

Evidence Support:

Prediction-Evidence	miRanda//PITA
Support Database	VmiReg