Detail Information

Basic Information:


  VIRBase ID:  

VHID00479547

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-10a-5p:           DPY19L1:      

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Interactor Information:


Interactor1 Interactor2
Symbol kshv-miR-K12-10a-5p DPY19L1
miRBase
Accession/Entrez ID		 MIMAT0015212 23333
Organism Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV) Homo sapiens
Category miRNA mRNA
Alias - -

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR DPY19L1
chr7:34996156(-) A-I      intronic
chr7:34996885(-) A-I      intronic
chr7:34996410(-) A-I      intronic
chr7:34996812(-) A-I      intronic
chr7:34996311(-) A-I      intronic
chr7:34996872(-) A-I      intronic
chr7:34996173(-) A-I      intronic
chr7:34996882(-) A-I      intronic
chr7:34996157(-) A-I      intronic
chr7:34996886(-) A-I      intronic
chr7:34996244(-) A-I      intronic
chr7:35041628(-) A-I      intronic
chr7:34973713(-) A-I      intronic
chr7:34996986(-) A-I      intronic
chr7:35041682(-) A-I      intronic
chr7:35041573(-) A-I      intronic
chr7:34996987(-) A-I      intronic
chr7:34996974(-) A-I      intronic
chr7:35060417(-) A-I      intronic
chr7:35042502(-) A-I      intronic
chr7:34996317(-) A-I      intronic
chr7:35006169(-) A-I      intronic
chr7:35059685(-) A-I      intronic
chr7:34996941(-) A-I      intronic
chr7:35032297(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED DPY19L1
chr7:34996163(-) A-G intron -    22484847
chr7:34996254(-) A-G intron -    22484847
chr7:34996317(-) A-G intron -    22484847
chr7:34996941(-) A-G intron -    22484847
chr7:34996948(-) A-G intron -    22484847
chr7:34996974(-) A-G intron -    22484847
chr7:34996987(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase DPY19L1
chr7:34969322-34969323(-) m6A 3'UTR       -
chr7:34969806-34969807(-) m6A 3'UTR       27773535
chr7:34969873-34969874(-) m6A 3'UTR       27773535
chr7:34970170-34970171(-) m6A 3'UTR       27773535
chr7:34970216-34970217(-) m6A 3'UTR       27773535
chr7:34970223-34970224(-) m6A 3'UTR       27773535
chr7:34970240-34970241(-) m6A 3'UTR       27773535
chr7:34970260-34970261(-) m6A 3'UTR       27773535
chr7:34970287-34970288(-) m6A 3'UTR       27773535
chr7:34970297-34970298(-) m6A 3'UTR       27773535
chr7:34970341-34970342(-) m6A 3'UTR       27773535
chr7:34970815-34970816(-) m6A 3'UTR       -
chr7:34970855-34970856(-) m6A 3'UTR       -
chr7:34971155-34971156(-) m6A 3'UTR       24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate DPY19L1
Chromatin HCC cell line (HepG2)|K562 cells     -
Cytosol HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -
Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleoplasm HCC cell line (HepG2)|K562 cells     -
Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: kshv-miR-K12-10a-5p
Interactor2: DPY19L1

Evidence Support:


Prediction-Evidence miRanda//Targetscan
Support Database VmiReg

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